Skip to content

HPC Module: ELPH

Synopsis

Adds ELPH software to your environment

About This Software
Official Site http://www.cbcb.umd.edu/software/ELPH/
Tags

Installed Versions

Version Install Date Default?
1.0.1 2017-02-27

Description

ELPH is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. We have used ELPH to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs). See below for instructions on downloading the complete system, including source code. An online tool that uses ELPH output for identifying exon splicing enhancers can be found here.

Category

Library Programming Software SysAdmin