HPC Module: MAFFT
Synopsis
Adds MAFFT software to your environment.
| About This Software | |
|---|---|
| Official Site | https://mafft.cbrc.jp/alignment/software/ |
| Tags | Multiple Sequence Alignment, Global Pairwise, Local Pairwise |
Installed Versions
| Version | Install Date | Default? |
|---|---|---|
| 7.222 | 2016-03-16 | |
| 7.273 | 2016-03-16 | |
| 7.294 | 2016-05-23 | |
| 7.475 | 2021-02-25 |
Description
Multiple sequence alignment (MSA) plays an important role in evolutionary analyses of biological sequences. MAFFT is an MSA program, first released in 2002, because of its high performance MAFFT is becoming popular in recent years. Multiple sequence alignment (MSA) plays an important role in evolutionary analyses of biological sequences. MAFFT is an MSA program, first released in 2002, because of its high performance MAFFT is becoming popular in recent years. This version of MAFFT supports RNA structural alignments as well as protein/DNA/RNA sequence alignments.
Citation(s)
This version of MAFFT consists of codes from the following sources: the Vienna RNA package
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Ivo L Hofacker and Martin Fekete and Peter F Stadler, Secondary structure prediction for aligned RNA sequences. J Mol Biol. 2002 vol. 319 (18) pp.3724-32 MXSCARNA
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Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai; A fast structural multiple alignment method for long RNA sequences.; BMC bioinformatics 9:33 (2008) ProbConsRNA
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Do CB, Mahabhashyam MS, Brudno M, Batzoglou S.; ProbCons: Probabilistic consistency-based multiple sequence alignment; Genome Res. 2005 15:330-40. More information about the license of these additional features can be found at https://mafft.cbrc.jp/alignment/software/license66.txt
Category
| Library | Programming | Software | SysAdmin |
|---|---|---|---|