HPC Module: MrBayes

Synopsis

Adds MrBayes software to your environment.

About This Software
Official Site	http://nbisweden.github.io/MrBayes/
Tags	`Phylogeny`, `Evolutionary Models`, `Bayesian Inference`

Version	Install Date	Default?
3.2.6-intel	2017-08-15
3.2.7a	2019-11-19

MrBayes 3 is a program for Bayesian inference and model choice across a large space of phylogenetic and evolutionary models.

If you publish results obtained using MrBayes you may want to cite the program using one of these papers:

Huelsenbeck, J.P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
Ronquist, F., and J.P. Huelsenbeck. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
Ronquist, F., M. Teslenko, P. van der Mark, D.L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M.A. Suchard, and J.P. Huelsenbeck. 2012. MRBAYES 3.2: Efficient Bayesian phylogenetic inference and model selection across a large model space. Syst. Biol. 61:539-542.

If you use the parallel abilities of the program, you may also want to cite:

Altekar, G., S. Dwarkadas, J. P. Huelsenbeck, and F. Ronquist. 2004. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407-415.

If you use the BEAGLE library, the appropriate citation is:

Ayres, D.L., A. Darling, D.J. Zwickl, P. Beerli, M.T. Holder, P.O. Lewis, J.P. Huelsenbeck, F. Ronquist, D. L. Swofford, M. P. Cummings, A. Rambaut, and M. A. Suchard. 2012. BEAGLE: an application programming interface for statistical phylogenetics. Syst. Biol. 61:170-173.

You may also see further citations for substitution models, computational methods implemented, etc, by issuing the citations command in MrBayes.