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HPC Module: SPAdes-HPC

Synopsis

Adds the St. Petersburg genome assembler to your environment.

About This Software
Official Site https://cab.spbu.ru/software/hpcspades/
Tags Sequencing

Installed Versions

Version Install Date Default?
3.15.0 2023-07-18

Description

SPAdes -- St. Petersburg genome Assembler -- was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic DNA sequencing. With time, the functionality of SPAdes was extended to enable assembly of IonTorrent data, as well as hybrid assembly from short and long reads (PacBio and Oxford Nanopore).

The HPC version of this software supports MPI.

Citation(s)

Full citation information can be found at https://cab.spbu.ru/software/spades/#citations.

Category

Library Programming Software SysAdmin