HPC Module: SPAdes-HPC
Synopsis
Adds the St. Petersburg genome assembler to your environment.
| About This Software | |
|---|---|
| Official Site | https://cab.spbu.ru/software/hpcspades/ |
| Tags | Sequencing |
Installed Versions
| Version | Install Date | Default? |
|---|---|---|
| 3.15.0 | 2023-07-18 |
Description
SPAdes -- St. Petersburg genome Assembler -- was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic DNA sequencing. With time, the functionality of SPAdes was extended to enable assembly of IonTorrent data, as well as hybrid assembly from short and long reads (PacBio and Oxford Nanopore).
The HPC version of this software supports MPI.
Citation(s)
Full citation information can be found at https://cab.spbu.ru/software/spades/#citations.
Category
| Library | Programming | Software | SysAdmin |
|---|---|---|---|