HPC Module: SeaView
Synopsis
Adds SeaView software to your environment.
| About This Software | |
|---|---|
| Official Site | http://doua.prabi.fr/software/seaview |
| Tags | GUI |
Installed Versions
| Version | Install Date | Default? |
|---|---|---|
| 4.6.1 | 2017-01-23 |
Description
SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.
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SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
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SeaView drives programs muscle or Clustal Omega for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files.
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Seaview drives the SeaView program to select blocks of evolutionarily conserved sites.
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SeaView computes phylogenetic trees by: ** parsimony, using PHYLIP's dnapars/protpars algorithm ** distance, with NJ or BioNJ algorithms on a variety of evolutionary distances ** maximum likelihood, driving program PhyML 3.1.
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SeaView prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files.
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SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet.
Category
| Library | Programming | Software | SysAdmin |
|---|---|---|---|