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HPC Module: fastp

Synopsis

Adds FASTP software to your environment.

About This Software
Official Site https://github.com/OpenGene/fastp
Tags fastq

Installed Versions

Version Install Date Default?
0.23.4 2024-02-16

Description

A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

Citation(s)

If you use fastp in your research, please cite:

  • Shifu Chen. 2023. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2: e107. https://doi.org/10.1002/imt2.107

  • Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu; fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, Volume 34, Issue 17, 1 September 2018, Pages i884–i890, https://doi.org/10.1093/bioinformatics/bty560

Category

Library Programming Software SysAdmin