HPC Module: fastp
Synopsis
Adds FASTP software to your environment.
| About This Software | |
|---|---|
| Official Site | https://github.com/OpenGene/fastp |
| Tags | fastq |
Installed Versions
| Version | Install Date | Default? |
|---|---|---|
| 0.23.4 | 2024-02-16 |
Description
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
Citation(s)
If you use fastp in your research, please cite:
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Shifu Chen. 2023. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2: e107. https://doi.org/10.1002/imt2.107
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Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu; fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, Volume 34, Issue 17, 1 September 2018, Pages i884–i890, https://doi.org/10.1093/bioinformatics/bty560
Category
| Library | Programming | Software | SysAdmin |
|---|---|---|---|