HPC Module: stacks
Synopsis
Adds the stacks software pipeline to your environment.
| About This Software | |
|---|---|
| Official Site | https://catchenlab.life.illinois.edu/stacks/ |
| Tags | Genetic Mapping, Population Genomics, Phylogenetics |
Installed Versions
| Version | Install Date | Default? |
|---|---|---|
| 2.59 | 2021-08-12 |
Description
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Citation(s)
Please cite one or both of these papers:
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J. Catchen, P. Hohenlohe, S. Bassham, A. Amores, and W. Cresko. Stacks: an analysis tool set for population genomics. Molecular Ecology. 2013. [reprint]
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J. Catchen, A. Amores, P. Hohenlohe, W. Cresko, and J. Postlethwait. Stacks: building and genotyping loci de novo from short-read sequences. G3: Genes, Genomes, Genetics, 1:171-182, 2011. [reprint]
Category
| Library | Programming | Software | SysAdmin |
|---|---|---|---|