Software Currently Available

Libraries

Module Name	Description	Tags
ADIOS2	ADIOS 2 is an open-source framework that addresses scientific data management challenges.
arpack-ng
BEAGLE	Adds the BEAGLE libraries to your environment.	Phylogeny, Parallel Processing
beagle-lib	Adds the beagle-lib libraries to your environment.	Phylogeny, Parallel Processing
Bioconductor	Adds the Bioconductor libraries to your environment.
Biopython	Adds Biopython software to your environment.
Boost	Adds Boost C++ Libraries (built with GCC) to your environment.	Linear Algebra, Pseudorandom, Multithreading, Image Processing, Regular Expressions, Unit Testing
CGAL	Adds the CGAL API to your environment.
CheMPS2	Adds the CheMPS2 API to your environment.
CUDA	Adds the CUDA API to your environment.
eigen	Adds the Eigen API to your environment.
fftw	Adds the fftw API to your environment.
FLTK	Adds the FLTK API to your environment	GUI
GEOS	Adds the GEOS API to your environment.
gflags	Adds the gflags API to your environment.
gl2ps	Adds the gl2ps API to your environment.
glog	Adds the glog API to your environment.
GLPK	Adds the GLPK API to your environment.
GSL	Adds the GSL API to your environment.
HDF5	Adds the HDF5 API to your environment.
HTSlib	Adds the HTSlib API to your environment.
hwloc	Adds the hwloc API to your environment.
isl	Adds the isl API to your environment.
KIM	Adds the OpenKIM API to your environment.
KIM-API	Adds the OpenKIM API to your environment.
LAPACK	LAPACK is a library of Fortran 77 subroutines for solving common linear algebra problems.	linear algebra, blas
LHAPDF	Adds the LHAPDF libraries to your environment.	Physics
libdrm	Direct Rendering Manager	DRM, DRI
libffi	Adds the libffi API to your environment.
libgit2	libgit2 is a portable, pure C implementation of the Git core methods
libgtextutils	Adds the libgtextutils Libraries to your environment.	Unmaintained
libjpeg-turbo	Adds libjpeg-turbo Libraries (built with GNU gcc) to your environment.
libpng	Adds libpng Libraries (built with GNU gcc) to your environment.
libpsl	This module adds the libpsl module to your environment
libxc	Libxc is a library of exchange-correlation and kinetic energy functionals for density-functional theory.
METIS	Adds the METIS API to your environment.
mpfr	Add the GNU MPFR library to your environment
MUMPS	Adds the MUMPS API to your environment.
MVAPICH2	Adds MVAPICH2 software to your environment	MPI
NetCDF-C	Adds the NetCDF-C API to your environment.
nlopt
OpenBLAS	Adds the OpenBLAS libraries to your environment	Science, Modeling
OpenEXR		Image
OpenMPI	Adds the OpenMPI libraries to your environment.
PCRE2	Adds the PCRE2 API to your environment.
perl5-libs	Adds perl5-libs libraries to your environment for some package dependencies.	Dependencies
PnetCDF	Adds the PnetCDF API to your environment.
protobuf	Adds Google's protocol buffers support to your environment.	compiler
PyTorch	Adds PyTorch software to your environment.	Machine Learning
PyTorch-GPU	Adds PyTorch software to your environment.	GPU, Machine Learning
Qhull	Adds the Qhull APIs to your environment.
Qt	Adds the Qt API to your environment.	GUI
RapidJSON	Adds RapidJSON to your environment
ReportLab	Adds ReportLab Libraries to your environment.	PDF Generation
ScaFaCoS	Adds the ScaFaCoS API to your environment.
spglib	C library for finding and handling crystal symmetries.	crystal structure
SuiteSparse	Adds the SuiteSparse API to your environment.
SUNDIALS	Adds SUNDIALS to your environment.
Szip	Adds the Szip API to your environment.
TensorFlow	Adds TensorFlow software to your environment
TensorFlow-GPU	Adds TensorFlow software to your environment	GPU
UCX	Communications Library	communications, rdma, InfiniBand
upcxx	Adds the UPC++ libraries to your environment.
Voro++	Adds the Voro++ API to your environment.
vscode-toolchain	Custom toolchain to enable newer Visual Studio Code Remote Development.
VTK	Adds the VTK API to your environment.
z3	Adds the z3 API to your environment.
zstd	Zstandard is a fast compression algorithm, providing high compression ratios.	Compression

Programming

Module Name	Description	Tags
Anaconda2	Adds the Anaconda2 software to your environment	Python2
Anaconda3	Adds the Anaconda3 software to your environment	Python3
Argbash	adds Argbash to your environment
Autoconf	Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages.
Bazel	adds the Bazel cross-platform build tools to your environment
Boost.Build	Adds the Boost.Build software to your environment
CMake	adds the CMake cross-platform build tools to your environment
DDD	adds DDD debugger to your environment
Eclipse	Adds the Eclipse IDE to your environment	Editor, GUI
Gaussian	Adds Gaussian to your environment	Science, Modeling
gcc	adds gcc compilers to your environment
Go	Adds Go programming language to your environment
Intel	None
Julia	Adds the Julia programming language to your environment
Libtool	Adds newer libtool scripts to your environment
LLVM	Adds LLVM compilers to your environment
Make	Adds the Make cross-platform build tools to your environment
Maple	Adds Maple to your environment.
Mathematica	Adds Mathematica to your environment
MATLAB	Adds MATLAB to your environment
Maven	Adds Apache Maven to your environment.
Miniforge3	Adds the Miniforge3 software to your environment	Python3
Ninja	Adds Ninja to your environment
oneAPI-advisor	Intel(R) Advisor 2021.1 (build 607872)	oneAPI, Code Analysis
oneAPI-ccl	Intel(R) oneAPI Collective Communications Library	oneAPI
oneAPI-clck	Sets up the Intel(R) Cluster Checker environment.	oneAPI, Cluster Checker
oneAPI-compiler	Configure for use with Intel 64-bit compiler(s).	oneAPI, Compilers, C, C++, FORTRAN
oneAPI-compiler-rt	Configure runtime libraries for use with Intel 64-bit compiler(s).	oneAPI, Runtime Libraries, C, C++, FORTRAN
oneAPI-compiler-rt32	Configure runtime libraries for use with Intel 32-bit compiler(s).	oneAPI, Runtime Libraries, C, C++, FORTRAN
oneAPI-compiler32	Configure for use with Intel 32-bit compiler(s).	oneAPI, Compilers, C, C++, FORTRAN
oneAPI-dal	Configure for use with Intel Data Analytics Library for intel64	DAL, DAAL
oneAPI-debugger	The gdb-oneapi debugger (an extension of standard gdb).	oneAPI, Debugger, gdb
oneAPI-dev-utilities	Add the oneAPI dev-utilities/bin and ../include to PATH and CPATH.	oneAPI
oneAPI-dnnl	Intel® oneAPI Deep Neural Network Library for the cpu_dpcpp_gpu_dpcpp configuration.	oneAPI, dnnl
oneAPI-dnnl-cpu-gomp	Intel® oneAPI Deep Neural Network Library for the cpu_gomp configuration.	oneAPI, dnnl
oneAPI-dnnl-cpu-iomp	Intel® oneAPI Deep Neural Network Library for the cpu_iomp configuration.	oneAPI, dnnl
oneAPI-dpct	Configure for Intel(R) DPC++ Compatibility Tool.	oneAPI
oneAPI-dpl	Configure for Intel(R) DPC++ Library.	oneAPI
oneAPI-init_opencl	Submodule for Intel(R) oneAPI DPCPP compiler FPGA environment	oneAPI
oneAPI-inspector	Intel(R) Inspector 2021.1 (build 604894)	oneAPI
oneAPI-intel_ipp_ia32	Intel(R) Integrated Performance Primitives IA-32 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules.	oneAPI, IPP
oneAPI-intel_ipp_intel64	Intel(R) Integrated Performance Primitives Intel(R) 64 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules.	oneAPI, IPP
oneAPI-intel_ippcp_ia32	Intel(R) Integrated Performance Primitives Cryptography IA-32 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules.	oneAPI, IPPCP, Cryptogaraphy
oneAPI-intel_ippcp_intel64	Intel(R) Integrated Performance Primitives Cryptography Intel(R) 64 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules.	oneAPI, IPPCP, Cryptography
oneAPI-itac	Intel(R) Trace Analyzer and Collector	oneAPI, IPPCP, Cryptography
oneAPI-mkl	Sets up environment for oneMKL IA-64 architecture	oneAPI, MKL, BLAS, LAPACK, ScaLAPACK, FFT
oneAPI-mkl32	Sets up environment for oneMKL IA-32 architecture	oneAPI, MKL, BLAS, LAPACK, ScaLAPACK, FFT
oneAPI-mpi	Intel(R) MPI Library	oneAPI, MPI
oneAPI-oclfpga	Intel(R) oneAPI DPCPP compiler FPGA environment	oneAPI, MPI
oneAPI-tbb	Intel(R) oneAPI Threading Building Blocks for intel64.	oneAPI, TBB
oneAPI-tbb32	Intel(R) oneAPI Threading Building Blocks for ia32.	oneAPI, TBB
oneAPI-vpl	Intel(R) oneAPI Video Processing Library.	oneAPI, VPL
oneAPI-vtune	Intel(R) oneAPI VTune(TM) Profiler 2021.1.1 (build 613804)	oneAPI, VPL
OpenJDK	Adds the OpenJDK software to your environment	JAVA, JDK, JRE
patchelf	Program used for editing binaries to work on older systems.
R	Adds R software to your environment
re2c	Adds re2c to your environment
ROOT	Adds the ROOT cross-platform build tools to your environment
rust	Adds the Rust programming language to your environment.
SWIG	Adds the SWIG cross-platform build tools to your environment

Software

Module Name	Description	Tags
ABCluster	Adds ABCluster software to your environment	ABC Algorithm, Chemistry
ABINIT	Adds ABINIT software to your environment.
AlphaFold	AlphaFold can accurately predict 3D models of protein structures and has the potential to accelerate research in every field of biology.
ANNOVAR	Adds ANNOVAR software to your environment
Apptainer	Adds Apptainer to your environment.
aria2	High-speed download utility with resuming and segmented downloading.	Utility
asciinema	Adds asciinema software to your environment
AtomEye	Adds AtomEye software to your environment	Atomistic Configuration Viewer
AUGUSTUS	Adds AUGUSTUS software to your environment
Avogadro	Adds Avogadro software to your environment	Visualization, Molecular Editor
BamTools	Adds BamTools software to your environment.
bat	Adds bat software to your environment.	Utility
BayeScan	Adds BayeScan software to your environment
BCFtools
BEDOPS	Adds BEDOPS software to your environment
bedtools	Adds bedtools software to your environment.	Genome Arithmetic
bowtie	Adds bowtie software to your environment.	Sequence Alignment
bowtie2	Adds bowtie2 software to your environment.	Sequence Alignment
BUSCO	Adds BUSCO software to your environment
BWA	Adds BWA software to your environment
Canu	Adds Canu software to your environment.
Clustal-Omega	Adds Clustal-Omega software to your environment	Multiple Sequence Alignment
clustalw	Adds clustalw software to your environment	Multiple Alignment
CompHEP	Adds CompHEP software to your environment
COMSOL	Adds COMSOL software to your environment	Finite Element Analysis
Consed	Adds Consed software to your environment
Cufflinks	Adds Cufflinks software to your environment.
curl	command line tool and library for transferring data with URLs
DaliLite	Adds DaliLite software to your environment.
deltaSHAPE	Adds the deltaSHAPE script to your environment	Biology, BioChem, Weeks-UNC
dftbplus	Adds the DFTB+ software to your environment.
Dialign	Adds Dialign software to your environment
Doxygen	Adds Doxygen software to your environment
eems	An implementation of the EEMS method for analyzing and visualizing spatial population structure from geo-referenced genetic samples.
ELPH	Adds ELPH software to your environment
EMBOSS	Adds EMBOSS software to your environment.
epstool	Adds epstool to your environment	Graphics
FAST	Adds FAST software to your environment	Structure Alignment
FASTA	Adds FASTA software to your environment
FastJet	Adds FastJet Software to your environment
fastp	Adds FASTP software to your environment.	fastq
FASTX-Toolkit	Adds FASTX-Toolkit software to your environment
FDist2	Adds FDist2 software to your environment
FFmpeg	Adds FFmpeg software to your environment	Multimedia Framework
Fiji	adds Fiji 1.53t to your environment.	Image Processing, Image Analysis, Java 8
FLASH	Adds FLASH software to your environment	Structure Alignment
FLOW3D-HYDRO	FLOW-3D HYDRO is the complete CFD modeling solution for the civil and environmental engineering industry.	CFD
FORM	Adds FORM software to your environment	Particle Physics
FUSTr	Adds FUSTr software to your environment	Phylogeny, Maximum Likelihood
GAMESS	Adds GAMESS software to your environment
Gblocks	Adds Gblocks software to your environment
GDAL	Adds GDAL Utilities and Libraries to your environment
Genepop	Adds Genepop software to your environment
git	Adds GIT software to your environment.	SCM, Version Control
git-lfs	adds GIT-LFS to your environment
Glimmer	Adds Glimmer software to your environment	DNA, Alignment, Gene
GMAP	Adds GMAP software to your environment.	Genome Mapping, Sequence Alignment
gnuplot	Adds gnuplot software to your environment	Scientific Plotting
Grace	Adds Grace software to your environment
GROMACS	Adds GROMACS software to your environment
Gurobi	Adds Gurobi Optimizer to your environment
HEASoft	Adds HEASoft software to your environment	FITS, fv, XANADU, XSTAR
HH-SUITE	Adds HH-SUITE software to your environment	HHAlign, HHBlits, HHFilter, HHMake, HHSearch
HMMER	Adds HMMER software to your environment	Biosequence Analysis
I-TASSER	Adds I-TASSER software to your environment	Alignment, Protein, Structure Prediction
ImageMagick	Adds ImageMagick software to your environment
ipyrad	Adds ipyrad software to your environment.
Jellyfish	Adds JellyFish software to your environment.
LAMMPS	Adds LAMMPS software to your environment	Molecular Dynamics
lmto	The Stuttgart TB-LMTO program is a computational tool used for calculating the electronic structure of materials, particularly crystalline solids, using the Tight-Binding Linear Muffin-Tin Orbital method.	Electronic-structure
lp_solve	Adds lp_solve software to your environment.
LS-DYNA	Adds LS-DYNA software to your environment.
LS-PrePost	Adds LS-PrePost software to your environment.
luscus	Adds luscus software to your environment.	Sequence Alignment
MAFFT	Adds MAFFT software to your environment.	Multiple Sequence Alignment, Global Pairwise, Local Pairwise
MCNP	Adds MCNP software to your environment.
MECPro	adds MECPro to your environment
MG5_aMC	Adds MG5_aMC Software to your environment.
MMseqs2	Adds MMseqs2 to your environment.	Sequencing
Modeller	Adds Modeller software to your environment	Protein, 3D Structure, Alignment
Molcas@UU	Adds Molcas software from the Molcas@UU distribution to your environment.	Sequence Alignment
Molden	Adds Molden software to your environment.	Molecular Structure
Molpro	Adds Molpro software to your environment.
MOSEK	Adds MOSEK software to your environment.	optimization, math
mothur	Adds mothur software to your environment.	bioinformatics, dotur, sons, treeclimber, unifrac, s-libshuff
Mplus	Adds Mplus Basic Program plus Combination Add-On to your environment.
MrBayes	Adds MrBayes software to your environment.	Phylogeny, Evolutionary Models, Bayesian Inference
MT-Toolbox	Adds MT-Toolbox software to your environment.	Molecular Tagging
MToolBox	Adds MToolBox software to your environment.	Sequence Alignment
MUSCLE	Adds MUSCLE software to your environment.	Multiple Sequence Alignment, Tree-Building, Profile Alignment
NBO	Adds NBO software to your environment.
NCBI-Blast	Adds NCBI-Blast software to your environment.	Sequence Alignment
Neovim	Adds Neovim software to your environment
Netpbm	Adds Netpbm software to your environment.
nmto	NMTO (N-th order Muffin-Tin Orbitals) is an advanced computational tool for electronic structure calculations. It extends the LMTO method, providing high-order orbitals for accurate modeling of materials with strong electronic correlations.	Electronic-structure
Octopus	Sets up the environment for Octopus, a TDDFT simulation code.	TDDFT
OpenBabel	Adds Open Babel software to your environment.
OpenFOAM	Adds OpenFOAM software to your environment.	Computational Fluid Dynamics, CFD
OpenMolcas	Adds OpenMolcas to your environment.	Sequence Alignment
OpenSees	Adds OpenSees software to your environment.
OpenSSL	Updated OpenSSL Crypto Software and Libraries
PAML	Adds PAML software to your environment.	Phylogeny
ParaView	Adds ParaView software to your environment.	GUI
phd2fasta	Adds phd2fasta software to your environment.
Phrap	Adds Phrap software to your environment.
Phred	Adds Phred software to your environment.
PHYLIP	Adds PHYLIP software to your environment.	Phylogeny
PhyML	Adds PhyML software to your environment.	Phylogeny, Maximum Likelihood
POVRay		Image, 3D, Raytracer
primer3	Adds primer3 software to your environment.	Designing PCR Primers
PROBCONS	Adds PROBCONS software to your environment.	Multiple Sequence Alignment
PROJ	Adds PROJ Software to your environment.
PROMALS	Adds PROMALS software to your environment.	Multiple Sequence Alignment, 3D Structure
ProtTest	Adds ProtTest software to your environment.
PyMol	Adds PyMol software to your environment.
qhost	Adds QHost software to your environment.	Local Mod
qtop	Adds qtop software to your environment.
RAxML	Adds Guassian to your environment.	Science, Modeling, Phylogenetic Trees
rclone	Adds the rclone software to your environment.	Utility, Cloud Storage
RingMapper	Adds RingMapper and PairMapper to your environment
ripgrep	Adds the ripgrep software to your environment.	Utility
RNAstructure	Adds RNAstructure to your environment	Biology, Biochem, Structure Prediction
RNATools	Adds the RNATools and foldPK scripts to your environment	Biology, BioChem, Weeks-UNC
Salmon	Adds Salmon Optimizer to your environment.
SAMtools	Adds SAMtools and BCFtools software to your environment.	Data Manipulation, Sequencing
SCOTCH	Adds SCOTCH software to your environment.
SeaView	Adds SeaView software to your environment.	GUI
SediFoam	Adds SediFoam software to your environment.
Serpent	Adds SERPENT software to your environment.
ShapeJumper	Adds ShapeJumper.sh script to your environment	Biology, BioChem, Weeks-UNC
ShapeMapper	Adds ShapeMapper to your environment.	Biology, BioChem, Weeks-UNC, RNA, Parallel Sequencing
SiLiX	Adds SiLIX software to your environment.
Simcoal2	Adds Simcoal2 software to your environment.
Singularity	Adds Singularity to your environment.
SPAdes	Adds the St. Petersburg genome assembler to your environment.	Sequencing
SPAdes-HPC	Adds the St. Petersburg genome assembler to your environment.	Sequencing
Spark	Adds Apache Spark to your environment.
SQLite	Adds SQLite software to your environment.
SRAToolkit	Adds SRAToolkit software to your environment.
stacks	Adds the stacks software pipeline to your environment.	Genetic Mapping, Population Genomics, Phylogenetics
Stata	Adds Stata software to your environment	statistics
StructureAnalysis	Adds the StructureAnalysis python scripts to your environment	Biology, BioChem, Weeks-UNC
SuperFold	Adds SuperFold to your environment	Biology, BioChem, Weeks-UNC
texinfo	Adds texinfo software to your environment.
TeXLive	Adds TeXLive software to your environment.
Tinker	Adds Tinker software to your environment.
tmux	Adds tmux software to your environment.	Terminal Multiplexer
TOPAS	Adds TOPAS to your environment
TopHat	Adds TopHat software to your environment.
Trinity	Adds Trinity software to your environment.	RNA, Inchwork, Chrysalis, Butterfly, De Novo Reconstruction, Transcription
Turbomole
VCFtools	Adds VCFtools software to your environment.	VCF Files
Velvet	Adds Velvet software to your environment.
Vim	Adds Vim software to your environment
VMD	Adds VMD software to your environment.
Wannier90	Wannier90 is an open-source code (released under GPLv2) for generating maximally-localized Wannier functions and using them to compute advanced electronic properties of materials with high efficiency and accuracy.
WIEN2k
Wise2	Adds Wise2 software to your environment.
Xmakemol	Adds Xmakemol software to your environment.	GUI, OpenGL, Molecular Structure

Last Modified: Sat Jun 21 23:04:15 EDT 2025