Software Currently Available
Libraries
Module Name | Description | Tags |
---|---|---|
ADIOS2 | ADIOS 2 is an open-source framework that addresses scientific data management challenges. | |
BEAGLE | Adds the BEAGLE libraries to your environment. | Phylogeny , Parallel Processing |
Bioconductor | Adds the Bioconductor libraries to your environment. | |
Biopython | Adds Biopython software to your environment. | |
Boost | Adds Boost C++ Libraries (built with GCC) to your environment. | Linear Algebra , Pseudorandom , Multithreading , Image Processing , Regular Expressions , Unit Testing |
CGAL | Adds the CGAL API to your environment. | |
CheMPS2 | Adds the CheMPS2 API to your environment. | |
CUDA | Adds the CUDA API to your environment. | |
eigen | Adds the Eigen API to your environment. | |
fftw | Adds the fftw API to your environment. | |
FLTK | Adds the FLTK API to your environment | GUI |
GEOS | Adds the GEOS API to your environment. | |
gflags | Adds the gflags API to your environment. | |
gl2ps | Adds the gl2ps API to your environment. | |
glog | Adds the glog API to your environment. | |
GLPK | Adds the GLPK API to your environment. | |
GSL | Adds the GSL API to your environment. | |
HDF5 | Adds the HDF5 API to your environment. | |
HTSlib | Adds the HTSlib API to your environment. | |
hwloc | Adds the hwloc API to your environment. | |
isl | Adds the isl API to your environment. | |
KIM | Adds the OpenKIM API to your environment. | |
KIM-API | Adds the OpenKIM API to your environment. | |
libdrm | Direct Rendering Manager | DRM , DRI |
libffi | Adds the libffi API to your environment. | |
libgit2 | libgit2 is a portable, pure C implementation of the Git core methods | |
libgtextutils | Adds the libgtextutils Libraries to your environment. | Unmaintained |
libjpeg-turbo | Adds libjpeg-turbo Libraries (built with GNU gcc) to your environment. | |
libpng | Adds libpng Libraries (built with GNU gcc) to your environment. | |
libxc | Libxc is a library of exchange-correlation and kinetic energy functionals for density-functional theory. | |
METIS | Adds the METIS API to your environment. | |
MUMPS | Adds the MUMPS API to your environment. | |
MVAPICH2 | Adds MVAPICH2 software to your environment | MPI |
NetCDF-C | Adds the NetCDF-C API to your environment. | |
nlopt | ||
OpenBLAS | Adds the OpenBLAS libraries to your environment | Science , Modeling |
OpenMPI | Adds the OpenMPI libraries to your environment. | |
PCRE2 | Adds the PCRE2 API to your environment. | |
perl5-libs | Adds perl5-libs libraries to your environment for some package dependencies. | Dependencies |
PnetCDF | Adds the PnetCDF API to your environment. | |
PyTorch | Adds PyTorch software to your environment. | Machine Learning |
PyTorch-GPU | Adds PyTorch software to your environment. | GPU , Machine Learning |
Qhull | Adds the Qhull APIs to your environment. | |
Qt | Adds the Qt API to your environment. | GUI |
ReportLab | Adds ReportLab Libraries to your environment. | PDF Generation |
ScaFaCoS | Adds the ScaFaCoS API to your environment. | |
SuiteSparse | Adds the SuiteSparse API to your environment. | |
SUNDIALS | Adds SUNDIALS to your environment. | |
Szip | Adds the Szip API to your environment. | |
TensorFlow | Adds TensorFlow software to your environment | |
TensorFlow-GPU | Adds TensorFlow software to your environment | GPU |
upcxx | Adds the UPC++ libraries to your environment. | |
Voro++ | Adds the Voro++ API to your environment. | |
VTK | Adds the VTK API to your environment. | |
z3 | Adds the z3 API to your environment. | |
zstd | Zstandard is a fast compression algorithm, providing high compression ratios. | Compression |
Programming
Module Name | Description | Tags |
---|---|---|
Anaconda2 | Adds the Anaconda2 software to your environment | Python2 |
Anaconda3 | Adds the Anaconda3 software to your environment | Python3 |
Argbash | adds Argbash to your environment | |
Autoconf | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. | |
Bazel | adds the Bazel cross-platform build tools to your environment | |
Boost.Build | Adds the Boost.Build software to your environment | |
CMake | adds the CMake cross-platform build tools to your environment | |
DDD | adds DDD debugger to your environment | |
Eclipse | Adds the Eclipse IDE to your environment | Editor , GUI |
Gaussian | Adds Gaussian to your environment | Science , Modeling |
gcc | adds gcc compilers to your environment | |
Go | Adds Go programming language to your environment | |
Intel | None | |
Julia | Adds the Julia programming language to your environment | |
Libtool | Adds newer libtool scripts to your environment | |
LLVM | Adds LLVM compilers to your environment | |
Make | Adds the Make cross-platform build tools to your environment | |
Maple | Adds Maple to your environment. | |
Mathematica | Adds Mathematica to your environment | |
MATLAB | Adds MATLAB to your environment | |
Miniforge3 | Adds the Miniforge3 software to your environment | Python3 |
Ninja | Adds Ninja to your environment | |
oneAPI-advisor | Intel(R) Advisor 2021.1 (build 607872) | oneAPI , Code Analysis |
oneAPI-ccl | Intel(R) oneAPI Collective Communications Library | oneAPI |
oneAPI-clck | Sets up the Intel(R) Cluster Checker environment. | oneAPI , Cluster Checker |
oneAPI-compiler | Configure for use with Intel 64-bit compiler(s). | oneAPI , Compilers , C , C++ , FORTRAN |
oneAPI-compiler-rt | Configure runtime libraries for use with Intel 64-bit compiler(s). | oneAPI , Runtime Libraries , C , C++ , FORTRAN |
oneAPI-compiler-rt32 | Configure runtime libraries for use with Intel 32-bit compiler(s). | oneAPI , Runtime Libraries , C , C++ , FORTRAN |
oneAPI-compiler32 | Configure for use with Intel 32-bit compiler(s). | oneAPI , Compilers , C , C++ , FORTRAN |
oneAPI-dal | Configure for use with Intel Data Analytics Library for intel64 | DAL , DAAL |
oneAPI-debugger | The gdb-oneapi debugger (an extension of standard gdb). | oneAPI , Debugger , gdb |
oneAPI-dev-utilities | Add the oneAPI dev-utilities/bin and ../include to PATH and CPATH. | oneAPI |
oneAPI-dnnl | Intel® oneAPI Deep Neural Network Library for the cpu_dpcpp_gpu_dpcpp configuration. | oneAPI , dnnl |
oneAPI-dnnl-cpu-gomp | Intel® oneAPI Deep Neural Network Library for the cpu_gomp configuration. | oneAPI , dnnl |
oneAPI-dnnl-cpu-iomp | Intel® oneAPI Deep Neural Network Library for the cpu_iomp configuration. | oneAPI , dnnl |
oneAPI-dpct | Configure for Intel(R) DPC++ Compatibility Tool. | oneAPI |
oneAPI-dpl | Configure for Intel(R) DPC++ Library. | oneAPI |
oneAPI-init_opencl | Submodule for Intel(R) oneAPI DPCPP compiler FPGA environment | oneAPI |
oneAPI-inspector | Intel(R) Inspector 2021.1 (build 604894) | oneAPI |
oneAPI-intel_ipp_ia32 | Intel(R) Integrated Performance Primitives IA-32 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules. | oneAPI , IPP |
oneAPI-intel_ipp_intel64 | Intel(R) Integrated Performance Primitives Intel(R) 64 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules. | oneAPI , IPP |
oneAPI-intel_ippcp_ia32 | Intel(R) Integrated Performance Primitives Cryptography IA-32 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules. | oneAPI , IPPCP , Cryptogaraphy |
oneAPI-intel_ippcp_intel64 | Intel(R) Integrated Performance Primitives Cryptography Intel(R) 64 architecture. For a full Intel(R) IPP functionality, you should load Intel(R) oneAPI Compiler and Intel(R) oneAPI Threading Building Blocks modules. | oneAPI , IPPCP , Cryptography |
oneAPI-itac | Intel(R) Trace Analyzer and Collector | oneAPI , IPPCP , Cryptography |
oneAPI-mkl | Sets up environment for oneMKL IA-64 architecture | oneAPI , MKL , BLAS , LAPACK , ScaLAPACK , FFT |
oneAPI-mkl32 | Sets up environment for oneMKL IA-32 architecture | oneAPI , MKL , BLAS , LAPACK , ScaLAPACK , FFT |
oneAPI-mpi | Intel(R) MPI Library | oneAPI , MPI |
oneAPI-oclfpga | Intel(R) oneAPI DPCPP compiler FPGA environment | oneAPI , MPI |
oneAPI-tbb | Intel(R) oneAPI Threading Building Blocks for intel64. | oneAPI , TBB |
oneAPI-tbb32 | Intel(R) oneAPI Threading Building Blocks for ia32. | oneAPI , TBB |
oneAPI-vpl | Intel(R) oneAPI Video Processing Library. | oneAPI , VPL |
oneAPI-vtune | Intel(R) oneAPI VTune(TM) Profiler 2021.1.1 (build 613804) | oneAPI , VPL |
OpenJDK | Adds the OpenJDK software to your environment | JAVA , JDK , JRE |
protobuf | Adds Google's protocol buffers support to your environment. | compiler |
R | Adds R software to your environment | |
re2c | Adds re2c to your environment | |
ROOT | Adds the ROOT cross-platform build tools to your environment | |
rust | Adds the Rust programming language to your environment. | |
SWIG | Adds the SWIG cross-platform build tools to your environment |
Software
Module Name | Description | Tags |
---|---|---|
ABCluster | Adds ABCluster software to your environment | ABC Algorithm , Chemistry |
ABINIT | Adds ABINIT software to your environment. | |
AlphaFold | AlphaFold can accurately predict 3D models of protein structures and has the potential to accelerate research in every field of biology. | |
ANNOVAR | Adds ANNOVAR software to your environment | |
aria2 | High-speed download utility with resuming and segmented downloading. | Utility |
asciinema | Adds asciinema software to your environment | |
AtomEye | Adds AtomEye software to your environment | Atomistic Configuration Viewer |
AUGUSTUS | Adds AUGUSTUS software to your environment | |
Avogadro | Adds Avogadro software to your environment | Visualization , Molecular Editor |
BamTools | Adds BamTools software to your environment. | |
bat | Adds bat software to your environment. | Utility |
BayeScan | Adds BayeScan software to your environment | |
BCFtools | ||
BEDOPS | Adds BEDOPS software to your environment | |
bedtools | Adds bedtools software to your environment. | Genome Arithmetic |
bowtie | Adds bowtie software to your environment. | Sequence Alignment |
bowtie2 | Adds bowtie2 software to your environment. | Sequence Alignment |
BUSCO | Adds BUSCO software to your environment | |
BWA | Adds BWA software to your environment | |
Canu | Adds Canu software to your environment. | |
Clustal-Omega | Adds Clustal-Omega software to your environment | Multiple Sequence Alignment |
clustalw | Adds clustalw software to your environment | Multiple Alignment |
CompHEP | Adds CompHEP software to your environment | |
COMSOL | Adds COMSOL software to your environment | Finite Element Analysis |
Consed | Adds Consed software to your environment | |
Cufflinks | Adds Cufflinks software to your environment. | |
DaliLite | Adds DaliLite software to your environment. | |
deltaSHAPE | Adds the deltaSHAPE script to your environment | Biology , BioChem , Weeks-UNC |
dftbplus | Adds the DFTB+ software to your environment. | |
Dialign | Adds Dialign software to your environment | |
Doxygen | Adds Doxygen software to your environment | |
eems | An implementation of the EEMS method for analyzing and visualizing spatial population structure from geo-referenced genetic samples. | |
ELPH | Adds ELPH software to your environment | |
EMBOSS | Adds EMBOSS software to your environment. | |
FAST | Adds FAST software to your environment | Structure Alignment |
FASTA | Adds FASTA software to your environment | |
FastJet | Adds FastJet Software to your environment | |
FASTX-Toolkit | Adds FASTX-Toolkit software to your environment | |
FDist2 | Adds FDist2 software to your environment | |
FFmpeg | Adds FFmpeg software to your environment | Multimedia Framework |
FLASH | Adds FLASH software to your environment | Structure Alignment |
FLOW3D-HYDRO | FLOW-3D HYDRO is the complete CFD modeling solution for the civil and environmental engineering industry. | CFD |
FORM | Adds FORM software to your environment | Particle Physics |
FUSTr | Adds FUSTr software to your environment | Phylogeny , Maximum Likelihood |
GAMESS | Adds GAMESS software to your environment | |
Gblocks | Adds Gblocks software to your environment | |
GDAL | Adds GDAL Utilities and Libraries to your environment | |
Genepop | Adds Genepop software to your environment | |
git | Adds GIT software to your environment. | SCM , Version Control |
Glimmer | Adds Glimmer software to your environment | DNA , Alignment , Gene |
GMAP | Adds GMAP software to your environment. | Genome Mapping , Sequence Alignment |
gnuplot | Adds gnuplot software to your environment | Scientific Plotting |
Grace | Adds Grace software to your environment | |
GROMACS | Adds GROMACS software to your environment | |
Gurobi | Adds Gurobi Optimizer to your environment | |
HEASoft | Adds HEASoft software to your environment | FITS , fv , XANADU , XSTAR |
HH-SUITE | Adds HH-SUITE software to your environment | HHAlign , HHBlits , HHFilter , HHMake , HHSearch |
HMMER | Adds HMMER software to your environment | Biosequence Analysis |
I-TASSER | Adds I-TASSER software to your environment | Alignment , Protein , Structure Prediction |
ImageMagick | Adds ImageMagick software to your environment | |
ipyrad | Adds ipyrad software to your environment. | |
Jellyfish | Adds JellyFish software to your environment. | |
LAMMPS | Adds LAMMPS software to your environment | Molecular Dynamics |
lp_solve | Adds lp_solve software to your environment. | |
LS-DYNA | Adds LS-DYNA software to your environment. | |
LS-PrePost | Adds LS-PrePost software to your environment. | |
luscus | Adds luscus software to your environment. | Sequence Alignment |
MAFFT | Adds MAFFT software to your environment. | Multiple Sequence Alignment , Global Pairwise , Local Pairwise |
MCNP | Adds MCNP software to your environment. | |
MG5_aMC | Adds MG5_aMC Software to your environment. | |
Modeller | Adds Modeller software to your environment | Protein , 3D Structure , Alignment |
Molcas@UU | Adds Molcas software from the Molcas@UU distribution to your environment. | Sequence Alignment |
Molden | Adds Molden software to your environment. | Molecular Structure |
Molpro | Adds Molpro software to your environment. | |
mothur | Adds mothur software to your environment. | bioinformatics , dotur , sons , treeclimber , unifrac , s-libshuff |
Mplus | Adds Mplus Basic Program plus Combination Add-On to your environment. | |
MrBayes | Adds MrBayes software to your environment. | Phylogeny , Evolutionary Models , Bayesian Inference |
MT-Toolbox | Adds MT-Toolbox software to your environment. | Molecular Tagging |
MToolBox | Adds MToolBox software to your environment. | Sequence Alignment |
MUSCLE | Adds MUSCLE software to your environment. | Multiple Sequence Alignment , Tree-Building , Profile Alignment |
NBO | Adds NBO software to your environment. | |
NCBI-Blast | Adds NCBI-Blast software to your environment. | Sequence Alignment |
Netpbm | Adds Netpbm software to your environment. | |
OpenBabel | Adds Open Babel software to your environment. | |
OpenFOAM | Adds OpenFOAM software to your environment. | Computational Fluid Dynamics , CFD |
OpenMolcas | Adds OpenMolcas to your environment. | Sequence Alignment |
OpenSees | Adds OpenSees software to your environment. | |
OpenSSL | Updated OpenSSL Crypto Software and Libraries | |
PAML | Adds PAML software to your environment. | Phylogeny |
ParaView | Adds ParaView software to your environment. | GUI |
phd2fasta | Adds phd2fasta software to your environment. | |
Phrap | Adds Phrap software to your environment. | |
Phred | Adds Phred software to your environment. | |
PHYLIP | Adds PHYLIP software to your environment. | Phylogeny |
PhyML | Adds PhyML software to your environment. | Phylogeny , Maximum Likelihood |
primer3 | Adds primer3 software to your environment. | Designing PCR Primers |
PROBCONS | Adds PROBCONS software to your environment. | Multiple Sequence Alignment |
PROJ | Adds PROJ Software to your environment. | |
PROMALS | Adds PROMALS software to your environment. | Multiple Sequence Alignment , 3D Structure |
ProtTest | Adds ProtTest software to your environment. | |
PyMol | Adds PyMol software to your environment. | |
qhost | Adds QHost software to your environment. | Local Mod |
qtop | Adds qtop software to your environment. | |
RAxML | Adds Guassian to your environment. | Science , Modeling , Phylogenetic Trees |
rclone | Adds the rclone software to your environment. | Utility , Cloud Storage |
RingMapper | Adds RingMapper and PairMapper to your environment | |
ripgrep | Adds the ripgrep software to your environment. | Utility |
RNAstructure | Adds RNAstructure to your environment | Biology , Biochem , Structure Prediction |
RNATools | Adds the RNATools and foldPK scripts to your environment | Biology , BioChem , Weeks-UNC |
Salmon | Adds Salmon Optimizer to your environment. | |
SAMtools | Adds SAMtools and BCFtools software to your environment. | Data Manipulation , Sequencing |
SCOTCH | Adds SCOTCH software to your environment. | |
SeaView | Adds SeaView software to your environment. | GUI |
SediFoam | Adds SediFoam software to your environment. | |
Serpent | Adds SERPENT software to your environment. | |
ShapeJumper | Adds ShapeJumper.sh script to your environment | Biology , BioChem , Weeks-UNC |
ShapeMapper | Adds ShapeMapper to your environment. | Biology , BioChem , Weeks-UNC , RNA , Parallel Sequencing |
SiLiX | Adds SiLIX software to your environment. | |
Simcoal2 | Adds Simcoal2 software to your environment. | |
Singularity | Adds Singularity to your environment. | |
SQLite | Adds SQLite software to your environment. | |
SRAToolkit | Adds SRAToolkit software to your environment. | |
stacks | Adds the stacks software pipeline to your environment. | Genetic Mapping , Population Genomics , Phylogenetics |
Stata | Adds Stata software to your environment | statistics |
StructureAnalysis | Adds the StructureAnalysis python scripts to your environment | Biology , BioChem , Weeks-UNC |
SuperFold | Adds SuperFold to your environment | Biology , BioChem , Weeks-UNC |
texinfo | Adds texinfo software to your environment. | |
TeXLive | Adds TeXLive software to your environment. | |
Tinker | Adds Tinker software to your environment. | |
tmux | Adds tmux software to your environment. | Terminal Multiplexer |
TopHat | Adds TopHat software to your environment. | |
Trinity | Adds Trinity software to your environment. | RNA , Inchwork , Chrysalis , Butterfly , De Novo Reconstruction , Transcription |
VCFtools | Adds VCFtools software to your environment. | VCF Files |
Velvet | Adds Velvet software to your environment. | |
Vim | Adds Vim software to your environment | |
VMD | Adds VMD software to your environment. | |
Wannier90 | Wannier90 is an open-source code (released under GPLv2) for generating maximally-localized Wannier functions and using them to compute advanced electronic properties of materials with high efficiency and accuracy. | |
Wise2 | Adds Wise2 software to your environment. | |
Xmakemol | Adds Xmakemol software to your environment. | GUI , OpenGL , Molecular Structure |
SysAdmin
Module Name | Description | Tags |
---|---|---|
fping | multiple host ping command | Network |
[xCAT](modules/SysAdmin/xCAT | Helper Aliases for xCAT Maintenance | xCAT |
Last Modified: Sun Jun 26 03:04:28 EDT 2022