Software Module Index
ai
| Name | Versions | Description |
|---|---|---|
| PyTorch | 1.12.0-foss-2022a-CUDA-11.7.0 | Tensors and Dynamic neural networks in Python with strong GPU acceleration.PyTorch is a deep learning framework that puts Python first. |
bio
| Name | Versions | Description |
|---|---|---|
| AUGUSTUS | 3.5.0-foss-2022b | AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences |
| AlphaFold | 2.3.4-foss-2022a-ColabFold | AlphaFold can predict protein structures with atomic accuracy even where nosimilar structure is known.This package of AlphaFold contains patches for ColabFold. |
| BCFtools | 1.17-GCC-12.2.0, 1.18-GCC-12.3.0 | Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants |
| BEDTools | 2.31.0-GCC-12.3.0 | BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. |
| BLAST | 2.2.26-Linux_x86_64 | Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. |
| BLAST+ | 2.14.1-gompi-2023a | Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. |
| BWA | 0.7.17-GCCcore-12.3.0 | Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. |
| BamTools | 2.5.2-GCC-12.2.0, 2.5.2-GCC-12.3.0 | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| Beagle | 5.4.22Jul22.46e-Java-11 | Beagle is a software package for phasing genotypes and for imputing ungenotyped markers. |
| Biopython | 1.79-foss-2022a, 1.83-foss-2023a | Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. |
| Bowtie | 1.3.1-GCC-11.3.0 | Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome. |
| Bowtie2 | 2.5.1-GCC-12.3.0 | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. |
| ClustalW2 | 2.1-GCC-12.3.0 | ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. |
| FASTA | 36.3.8i-GCC-12.2.0 | The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. |
| FASTX-Toolkit | 0.0.14-GCC-11.3.0 | The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. |
| GDGraph | 1.56-GCCcore-11.3.0 | GDGraph is a Perl package to generate charts |
| GMAP-GSNAP | 2023-04-20-GCC-12.2.0 | GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program |
| GROMACS | 2023.3-foss-2023a, 2024.1-foss-2023b | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate theNewtonian equations of motion for systems with hundreds to millions ofparticles.This is a CPU only build, containing both MPI and threadMPI binariesfor both single and double precision.It also contains the gmxapi extension for the single precision MPI build. |
| Gblocks | 0.91b | Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis |
| HH-suite | 3.3.0-gompi-2022a | The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). |
| HMMER | 3.3.2-gompi-2022a, 3.4-gompi-2023a | HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. |
| HTSlib | 1.17-GCC-12.2.0, 1.18-GCC-12.3.0 | A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix |
| I-TASSER | 5.2 | I-TASSER is a set of pre-compiled binaries and scripts for protein structure and functionmodelling and comparison. |
| Kalign | 3.3.5-GCCcore-11.3.0 | Kalign is a fast multiple sequence alignment program for biological sequences. |
| MAFFT | 7.520-GCC-12.3.0-with-extensions | MAFFT is a multiple sequence alignment program for unix-like operating systems.It offers a range of multiple alignment methods, L-INS-i (accurate; for alignmentof <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences), etc. |
| MUSCLE | 5.1.0-GCCcore-12.3.0 | MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks. |
| MrBayes | 3.2.7-gompi-2022a | MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. |
| OpenMM | 8.0.0-foss-2022a | OpenMM is a toolkit for molecular simulation. |
| PAML | 4.10.5-GCCcore-11.3.0 | PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. |
| PHYLIP | 3.697-GCC-12.3.0 | PHYLIP is a free package of programs for inferring phylogenies. |
| PhyML | 3.3.20220408-foss-2023a | PhyML is a software package that uses modern statistical approaches to analyse alignments of nucleotide or amino acid sequences in a phylogenetic framework. |
| R-bundle-Bioconductor | 3.18-foss-2023a-R-4.3.2 | Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data. |
| RAxML-NG | 1.2.0-GCC-12.3.0 | RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. |
| SAMtools | 1.17-GCC-12.2.0, 1.18-GCC-12.3.0 | SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. |
| SPAdes | 3.15.4-GCC-12.3.0 | Genome assembler for single-cell and isolates data sets |
| SRA-Toolkit | 3.0.10-gompi-2023a | The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format |
| VCFtools | 0.1.16-GCC-12.3.0 | The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. |
| Velvet | 1.2.10-foss-2023a-mt-kmer_191 | Sequence assembler for very short reads |
| fastp | 0.23.4-GCC-12.3.0 | A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. |
| ncbi-vdb | 3.0.10-gompi-2023a | The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. |
cae
| Name | Versions | Description |
|---|---|---|
| OpenFOAM | v2312-foss-2023a | OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. |
chem
| Name | Versions | Description |
|---|---|---|
| CheMPS2 | 1.8.12-foss-2022b | CheMPS2 is a scientific library which contains a spin-adapted implementation of thedensity matrix renormalization group (DMRG) for ab initio quantum chemistry. |
| CoordgenLibs | 3.0.2-gompi-2023a | Schrodinger-developed 2D Coordinate Generation |
| GAMESS-US | 20230930-R2-intel-compilers-2022.1.0 | The General Atomic and Molecular Electronic Structure System (GAMESS)is a general ab initio quantum chemistry package.This module can be used on a maximum of 1 nodes and 1024 CPUs per node. |
| Gaussian | 16.C.02-AVX2 | Gaussian provides state-of-the-art capabilities for electronic structuremodeling. Gaussian 09 is licensed for a wide variety of computersystems. All versions of Gaussian 09 contain every scientific/modelingfeature, and none imposes any artificial limitations on calculationsother than your computing resources and patience.This is the official gaussian AVX2 build. |
| LAMMPS | 2Aug2023_update2-foss-2023a-kokkos, 2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 | LAMMPS is a classical molecular dynamics code, and an acronymfor Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS haspotentials for solid-state materials (metals, semiconductors) and soft matter(biomolecules, polymers) and coarse-grained or mesoscopic systems. It can beused to model atoms or, more generically, as a parallel particle simulator atthe atomic, meso, or continuum scale. LAMMPS runs on single processors or inparallel using message-passing techniques and a spatial-decomposition of thesimulation domain. The code is designed to be easy to modify or extend with newfunctionality. |
| MDI | 1.4.26-gompi-2023a | The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods. |
| Molden | 7.3-GCCcore-12.3.0 | Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac |
| Molpro | mpp-2024.1.0.linux_x86_64_mpipr | Molpro is a complete system of ab initio programs for molecular electronic structure calculations. |
| OpenBabel | 3.1.1-gompi-2023a | Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. |
| PLUMED | 2.9.0-foss-2023a | PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. |
| Wannier90 | 3.1.0-foss-2023a | A tool for obtaining maximally-localised Wannier functions |
| kim-api | 2.3.0-GCC-12.3.0 | Open Knowledgebase of Interatomic Models.KIM is an API and OpenKIM is a collection of interatomic models (potentials) foratomistic simulations. This is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild only installs the API, the models can be installed with thepackage openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAMEor kim-api-collections-management install user OpenKIMto install them all. |
| libxc | 5.2.3-GCC-11.3.0, 5.2.3-intel-compilers-2022.1.0 | Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. |
compiler
| Name | Versions | Description |
|---|---|---|
| Clang | 13.0.1-GCCcore-11.3.0 | C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC. |
| GCC | 11.3.0, 12.2.0, 12.3.0, 13.2.0 | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). |
| GCCcore | 11.3.0, 12.2.0, 12.3.0, 13.2.0 | The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). |
| Go | 1.22.1 | Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. |
| LLVM | 14.0.3-GCCcore-11.3.0, 15.0.5-GCCcore-12.2.0, 16.0.6-GCCcore-12.3.0 | The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. |
| intel-compilers | 2022.1.0, 2023.1.0 | Intel C, C++ & Fortran compilers (classic and oneAPI) |
data
| Name | Versions | Description |
|---|---|---|
| Arrow | 14.0.1-gfbf-2023a | Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. |
| GDAL | 3.7.1-foss-2023a | GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. |
| HDF | 4.2.16-2-GCCcore-12.3.0 | HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. |
| HDF5 | 1.12.2-gompi-2022a, 1.14.0-gompi-2022b, 1.14.0-gompi-2023a, 1.14.0-iimpi-2023a | HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. |
| LAME | 3.100-GCCcore-11.3.0, 3.100-GCCcore-12.3.0 | LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. |
| PnetCDF | 1.12.3-gompi-2023a | Parallel netCDF: A Parallel I/O Library for NetCDF File Access |
| PostgreSQL | 16.1-GCCcore-12.3.0 | PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. |
| PyTables | 3.8.0-foss-2022a | PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browsing, processing and searching very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases. |
| ROOT | 6.26.10-foss-2022b | The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way. |
| dask | 2022.10.0-foss-2022a | Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. |
| dill | 0.3.6-GCCcore-11.3.0 | dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. |
| h5py | 3.7.0-foss-2022a | HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. |
| netCDF | 4.9.2-gompi-2023a | NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. |
| scikit-learn | 1.1.2-foss-2022a | Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world,building upon numpy, scipy, and matplotlib. As a machine-learning module,it provides versatile tools for data mining and analysis in any field of science and engineering.It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. |
devel
| Name | Versions | Description |
|---|---|---|
| Autoconf | 2.71, 2.71-GCCcore-11.3.0, 2.71-GCCcore-12.2.0, 2.71-GCCcore-12.3.0, 2.71-GCCcore-13.2.0 | Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. |
| Automake | 1.16.5, 1.16.5-GCCcore-11.3.0, 1.16.5-GCCcore-12.2.0, 1.16.5-GCCcore-12.3.0, 1.16.5-GCCcore-13.2.0 | Automake: GNU Standards-compliant Makefile generator |
| Autotools | 20220317, 20220317-GCCcore-11.3.0, 20220317-GCCcore-12.2.0, 20220317-GCCcore-12.3.0, 20220317-GCCcore-13.2.0 | This bundle collect the standard GNU build tools: Autoconf, Automake and libtool |
| Bazel | 5.1.1-GCCcore-11.3.0, 6.3.1-GCCcore-12.3.0 | Bazel is a build tool that builds code quickly and reliably.It is used to build the majority of Google's software. |
| Boost | 1.81.0-GCC-12.2.0, 1.82.0-GCC-12.3.0 | Boost provides free peer-reviewed portable C++ source libraries. |
| CMake | 3.23.1-GCCcore-11.3.0, 3.24.3-GCCcore-11.3.0, 3.24.3-GCCcore-12.2.0, 3.26.3-GCCcore-12.3.0, 3.27.6-GCCcore-13.2.0 | CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. |
| DBus | 1.14.0-GCCcore-11.3.0, 1.15.4-GCCcore-12.3.0 | D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. |
| Doxygen | 1.9.4-GCCcore-11.3.0, 1.9.5-GCCcore-12.2.0, 1.9.7-GCCcore-12.3.0 | Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. |
| GObject-Introspection | 1.72.0-GCCcore-11.3.0, 1.76.1-GCCcore-12.3.0 | GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. |
| LZO | 2.10-GCCcore-11.3.0 | Portable lossless data compression library |
| M4 | 1.4.18, 1.4.19, 1.4.19-GCCcore-11.3.0, 1.4.19-GCCcore-12.2.0, 1.4.19-GCCcore-12.3.0, 1.4.19-GCCcore-13.2.0 | GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. |
| Mako | 1.2.0-GCCcore-11.3.0, 1.2.4-GCCcore-12.2.0, 1.2.4-GCCcore-12.3.0 | A super-fast templating language that borrows the best ideas from the existing templating languages |
| PCRE | 8.45-GCCcore-11.3.0, 8.45-GCCcore-12.2.0, 8.45-GCCcore-12.3.0 | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. |
| PCRE2 | 10.42-GCCcore-12.3.0 | The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. |
| PyZMQ | 24.0.1-GCCcore-11.3.0 | Python bindings for ZeroMQ |
| Qt5 | 5.15.10-GCCcore-12.3.0 | Qt is a comprehensive cross-platform C++ application framework. |
| SQLite | 3.38.3-GCCcore-11.3.0, 3.39.4-GCCcore-12.2.0, 3.42.0-GCCcore-12.3.0, 3.43.1-GCCcore-13.2.0 | SQLite: SQL Database Engine in a C Library |
| SWIG | 4.0.2-GCCcore-11.3.0, 4.1.1-GCCcore-12.3.0 | SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. |
| Spark | 3.5.1-foss-2023a-Java-17 | Spark is Hadoop MapReduce done in memory |
| ZeroMQ | 4.3.4-GCCcore-11.3.0 | ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. |
| ant | 1.10.12-Java-11 | Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. |
| flatbuffers | 2.0.7-GCCcore-11.3.0 | FlatBuffers: Memory Efficient Serialization LibraryIncludes the Flatbuffers compiler, C/C++ bindings and Python runtime library. |
| flatbuffers-python | 2.0-GCCcore-11.3.0 | Python Flatbuffers runtime library. |
| gperf | 3.1-GCCcore-11.3.0, 3.1-GCCcore-12.2.0, 3.1-GCCcore-12.3.0 | GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. |
| intltool | 0.51.0-GCCcore-11.3.0, 0.51.0-GCCcore-12.2.0, 0.51.0-GCCcore-12.3.0 | intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. |
| libgit2 | 1.7.1-GCCcore-12.3.0 | libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrantlinkable library with a solid API, allowing you to write native speed custom Git applications in any languagewhich supports C bindings. |
| make | 4.3-GCCcore-11.3.0, 4.3-GCCcore-12.2.0, 4.4.1-GCCcore-12.3.0, 4.4.1-GCCcore-13.2.0 | GNU version of make utility |
| makedepend | 1.0.7-GCCcore-12.3.0 | The makedepend package contains a C-preprocessor like utility to determine build-time dependencies. |
| makeinfo | 7.0.3-GCCcore-12.3.0 | makeinfo is part of the Texinfo project, the official documentation format of the GNU project. |
| ncurses | 6.2, 6.3, 6.3-GCCcore-11.3.0, 6.3-GCCcore-12.2.0, 6.4, 6.4-GCCcore-12.3.0, 6.4-GCCcore-13.2.0 | The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. |
| nsync | 1.25.0-GCCcore-11.3.0 | nsync is a C library that exports various synchronization primitives, such as mutexes |
| pkgconf | 1.8.0, 1.8.0-GCCcore-11.3.0, 1.9.3-GCCcore-12.2.0, 1.9.5-GCCcore-12.3.0, 2.0.3-GCCcore-13.2.0 | pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. |
| pkgconfig | 1.5.5-GCCcore-11.3.0-python | pkgconfig is a Python module to interface with the pkg-config command line tool |
| protobuf | 3.19.4-GCCcore-11.3.0 | Google Protocol Buffers |
| protobuf-python | 3.19.4-GCCcore-11.3.0 | Python Protocol Buffers runtime library. |
| texlive | 20230313-GCC-12.3.0 | TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated. |
| xorg-macros | 1.19.3-GCCcore-11.3.0, 1.19.3-GCCcore-12.2.0, 1.20.0-GCCcore-12.3.0, 1.20.0-GCCcore-13.2.0 | X.org macros utilities. |
| xproto | 7.0.31-GCCcore-12.3.0 | X protocol and ancillary headers |
lang
| Name | Versions | Description |
|---|---|---|
| Bison | 3.8.2, 3.8.2-GCCcore-11.3.0, 3.8.2-GCCcore-12.2.0, 3.8.2-GCCcore-12.3.0, 3.8.2-GCCcore-13.2.0 | Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. |
| FriBidi | 1.0.12-GCCcore-11.3.0, 1.0.12-GCCcore-12.3.0 | The Free Implementation of the Unicode Bidirectional Algorithm. |
| Java | 11.0.20, 17.0.6, 8.402 | Java Platform, Standard Edition (Java SE) lets you develop and deployJava applications on desktops and servers. |
| Julia | 1.10.0-linux-x86_64 | Julia is a high-level, high-performance dynamic programming language for numerical computing |
| Lua | 5.4.6-GCCcore-12.3.0 | Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. |
| Miniforge3 | 24.1.2-0 | Miniforge is a free minimal installer for conda and Mamba specific to conda-forge. |
| NASM | 2.15.05-GCCcore-11.3.0, 2.16.01-GCCcore-12.3.0 | NASM: General-purpose x86 assembler |
| Perl | 5.34.1-GCCcore-11.3.0, 5.36.0-GCCcore-12.2.0, 5.36.1-GCCcore-12.3.0, 5.38.0-GCCcore-13.2.0 | Larry Wall's Practical Extraction and Report LanguageIncludes a small selection of extra CPAN packages for core functionality. |
| Perl-bundle-CPAN | 5.36.1-GCCcore-12.3.0 | A set of common packages from CPAN |
| Python | 3.10.4-GCCcore-11.3.0, 3.10.4-GCCcore-11.3.0-bare, 3.10.8-GCCcore-12.2.0, 3.10.8-GCCcore-12.2.0-bare, 3.11.3-GCCcore-12.3.0, 3.11.5-GCCcore-13.2.0 | Python is a programming language that lets you work more quickly and integrate your systems more effectively. |
| Python-bundle-PyPI | 2023.06-GCCcore-12.3.0, 2023.10-GCCcore-13.2.0 | Bundle of Python packages from PyPI |
| R | 4.3.2-gfbf-2023a | R is a free software environment for statistical computing and graphics. |
| R-bundle-CRAN | 2023.12-foss-2023a | Bundle of R packages from CRAN |
| Rust | 1.60.0-GCCcore-11.3.0, 1.65.0-GCCcore-12.2.0, 1.70.0-GCCcore-12.3.0, 1.73.0-GCCcore-13.2.0 | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. |
| SciPy-bundle | 2022.05-foss-2022a, 2023.02-gfbf-2022b, 2023.07-gfbf-2023a, 2023.11-gfbf-2023b | Bundle of Python packages for scientific software |
| Tcl | 8.6.12-GCCcore-11.3.0, 8.6.12-GCCcore-12.2.0, 8.6.13-GCCcore-12.3.0, 8.6.13-GCCcore-13.2.0 | Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. |
| Tkinter | 3.10.4-GCCcore-11.3.0 | Tkinter module, built with the Python buildsystem |
| Yasm | 1.3.0-GCCcore-11.3.0, 1.3.0-GCCcore-12.3.0 | Yasm: Complete rewrite of the NASM assembler with BSD license |
| flex | 2.6.4, 2.6.4-GCCcore-11.3.0, 2.6.4-GCCcore-12.2.0, 2.6.4-GCCcore-12.3.0, 2.6.4-GCCcore-13.2.0 | Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. |
| nodejs | 18.17.1-GCCcore-12.3.0 | Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. |
| numba | 0.56.4-foss-2022a | Numba is an Open Source NumPy-aware optimizing compiler forPython sponsored by Continuum Analytics, Inc. It uses the remarkable LLVMcompiler infrastructure to compile Python syntax to machine code. |
| ruamel.yaml | 0.17.21-GCCcore-11.3.0 | ruamel.yaml is a YAML 1.2 loader/dumper package for Python. |
lib
| Name | Versions | Description |
|---|---|---|
| Abseil | 20230125.3-GCCcore-12.3.0 | Abseil is an open-source collection of C++ library code designed to augment theC++ standard library. The Abseil library code is collected from Google's ownC++ code base, has been extensively tested and used in production, and is thesame code we depend on in our daily coding lives. |
| Blosc | 1.21.3-GCCcore-11.3.0 | Blosc, an extremely fast, multi-threaded, meta-compressor library |
| Blosc2 | 2.6.1-GCCcore-11.3.0 | Blosc, an extremely fast, multi-threaded, meta-compressor library |
| Brotli | 1.0.9-GCCcore-11.3.0, 1.0.9-GCCcore-12.2.0, 1.0.9-GCCcore-12.3.0 | Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932. |
| Brunsli | 0.1-GCCcore-12.3.0 | Brunsli is a lossless JPEG repacking library. |
| CFITSIO | 4.2.0-GCCcore-12.2.0, 4.3.0-GCCcore-12.3.0 | CFITSIO is a library of C and Fortran subroutines for reading and writing data files inFITS (Flexible Image Transport System) data format. |
| Catch2 | 2.13.9-GCCcore-12.2.0, 2.13.9-GCCcore-12.3.0, 2.13.9-GCCcore-13.2.0 | A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later |
| DeepLabCut | 2.3.6-foss-2022a-CUDA-11.7.0 | Markerless tracking of user-defined features with deep learning |
| FLAC | 1.4.2-GCCcore-12.3.0 | FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaningthat audio is compressed in FLAC without any loss in quality. |
| FlexiBLAS | 3.2.0-GCC-11.3.0, 3.2.1-GCC-12.2.0, 3.3.1-GCC-12.3.0, 3.3.1-GCC-13.2.0 | FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementationused by a program without recompiling or relinking it. |
| GDRCopy | 2.3-GCCcore-11.3.0, 2.3.1-GCCcore-12.3.0 | A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. |
| GlobalArrays | 5.8.2-intel-2023a | Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model |
| Graphene | 1.10.8-GCCcore-11.3.0 | Graphene is a thin layer of types for graphic libraries |
| Highway | 1.0.4-GCCcore-12.3.0 | Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the sameoperation to 'lanes'. |
| ICU | 71.1-GCCcore-11.3.0, 72.1-GCCcore-12.2.0, 73.2-GCCcore-12.3.0 | ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. |
| ISA-L | 2.30.0-GCCcore-12.3.0 | Intelligent Storage Acceleration Library |
| Imath | 3.1.5-GCCcore-11.3.0, 3.1.7-GCCcore-12.3.0 | Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics |
| JsonCpp | 1.9.5-GCCcore-11.3.0 | JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. |
| LERC | 4.0.0-GCCcore-12.3.0 | LERC is an open-source image or raster format which supports rapid encoding and decodingfor any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding,so the precision of the original input image is preserved (within user defined error bounds). |
| LMDB | 0.9.29-GCCcore-11.3.0, 0.9.31-GCCcore-12.3.0 | LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. |
| LibTIFF | 4.3.0-GCCcore-11.3.0, 4.5.0-GCCcore-12.3.0 | tiff: Library and tools for reading and writing TIFF data files |
| NCCL | 2.12.12-GCCcore-11.3.0-CUDA-11.7.0, 2.18.3-GCCcore-12.3.0-CUDA-12.1.1 | The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs. |
| NSPR | 4.35-GCCcore-12.3.0 | Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. |
| NSS | 3.89.1-GCCcore-12.3.0 | Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. |
| OpenJPEG | 2.5.0-GCCcore-11.3.0, 2.5.0-GCCcore-12.3.0 | OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. |
| PMIx | 4.1.2-GCCcore-11.3.0, 4.2.2-GCCcore-12.2.0, 4.2.4-GCCcore-12.3.0, 4.2.6-GCCcore-13.2.0 | Process Management for Exascale EnvironmentsPMI Exascale (PMIx) represents an attempt toprovide an extended version of the PMI standard specifically designedto support clusters up to and including exascale sizes. The overallobjective of the project is not to branch the existing pseudo-standarddefinitions - in fact, PMIx fully supports both of the existing PMI-1and PMI-2 APIs - but rather to (a) augment and extend those APIs toeliminate some current restrictions that impact scalability, and (b)provide a reference implementation of the PMI-server that demonstratesthe desired level of scalability. |
| PROJ | 9.2.0-GCCcore-12.3.0 | Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates |
| PyYAML | 6.0-GCCcore-11.3.0 | PyYAML is a YAML parser and emitter for the Python programming language. |
| RE2 | 2023-08-01-GCCcore-12.3.0 | RE2 is a fast, safe, thread-friendly alternative to backtracking regularexpression engines like those used in PCRE, Perl, and Python. It is a C++library. |
| RapidJSON | 1.1.0-20230928-GCCcore-12.3.0 | A fast JSON parser/generator for C++ with both SAX/DOM style API |
| SDL2 | 2.28.2-GCCcore-12.3.0 | SDL: Simple DirectMedia Layer, a cross-platform multimedia library |
| TensorFlow | 2.11.0-foss-2022a, 2.11.0-foss-2022a-CUDA-11.7.0 | An open-source software library for Machine Intelligence |
| UCC | 1.0.0-GCCcore-11.3.0, 1.1.0-GCCcore-12.2.0, 1.2.0-GCCcore-12.3.0, 1.2.0-GCCcore-13.2.0 | UCC (Unified Collective Communication) is a collectivecommunication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. |
| UCX | 1.12.1-GCCcore-11.3.0, 1.13.1-GCCcore-12.2.0, 1.14.1-GCCcore-12.3.0, 1.15.0-GCCcore-13.2.0 | Unified Communication XAn open-source production grade communication framework for data centricand high-performance applications |
| UCX-CUDA | 1.12.1-GCCcore-11.3.0-CUDA-11.7.0, 1.14.1-GCCcore-12.3.0-CUDA-12.1.1 | Unified Communication XAn open-source production grade communication framework for data centricand high-performance applicationsThis module adds the UCX CUDA support. |
| Xerces-C++ | 3.2.4-GCCcore-12.3.0 | Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs. |
| c-ares | 1.18.1-GCCcore-11.3.0 | c-ares is a C library for asynchronous DNS requests (including name resolves) |
| double-conversion | 3.2.0-GCCcore-11.3.0, 3.3.0-GCCcore-12.3.0 | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. |
| elfutils | 0.187-GCCcore-11.3.0 | The elfutils project provides libraries and tools for ELF files and DWARF data. |
| ffnvcodec | 11.1.5.2, 12.0.16.0 | FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present(picked up dynamically). |
| freeglut | 3.4.0-GCCcore-12.2.0 | freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library. |
| giflib | 5.2.1-GCCcore-11.3.0, 5.2.1-GCCcore-12.3.0 | giflib is a library for reading and writing gif images.It is API and ABI compatible with libungif which was in wide use whilethe LZW compression algorithm was patented. |
| graphite2 | 1.3.14-GCCcore-12.3.0 | Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. |
| imgaug | 0.4.0-foss-2022a-CUDA-11.7.0 | This python library helps you with augmenting images for your machine learning projects. It converts a set of input images into a new, much larger set of slightly altered images. |
| json-c | 0.16-GCCcore-12.3.0 | JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSONobjects. |
| libdrm | 2.4.110-GCCcore-11.3.0, 2.4.114-GCCcore-12.2.0, 2.4.115-GCCcore-12.3.0 | Direct Rendering Manager runtime library. |
| libepoxy | 1.5.10-GCCcore-11.3.0, 1.5.10-GCCcore-12.3.0 | Epoxy is a library for handling OpenGL function pointer management for you |
| libevent | 2.1.12, 2.1.12-GCCcore-11.3.0, 2.1.12-GCCcore-12.2.0, 2.1.12-GCCcore-12.3.0, 2.1.12-GCCcore-13.2.0 | The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. |
| libfabric | 1.15.1-GCCcore-11.3.0, 1.16.1-GCCcore-12.2.0, 1.18.0-GCCcore-12.3.0, 1.19.0-GCCcore-13.2.0 | Libfabric is a core component of OFI. It is the library that defines and exportsthe user-space API of OFI, and is typically the only software that applicationsdeal with directly. It works in conjunction with provider libraries, which areoften integrated directly into libfabric. |
| libffi | 3.4.2-GCCcore-11.3.0, 3.4.4-GCCcore-12.2.0, 3.4.4-GCCcore-12.3.0, 3.4.4-GCCcore-13.2.0 | The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. |
| libgd | 2.3.3-GCCcore-11.3.0, 2.3.3-GCCcore-12.3.0 | GD is an open source code library for the dynamic creation of images by programmers. |
| libgeotiff | 1.7.1-GCCcore-12.3.0 | Library for reading and writing coordinate system information from/to GeoTIFF files |
| libglvnd | 1.4.0-GCCcore-11.3.0, 1.6.0-GCCcore-12.2.0, 1.6.0-GCCcore-12.3.0 | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. |
| libiconv | 1.17-GCCcore-11.3.0, 1.17-GCCcore-12.2.0, 1.17-GCCcore-12.3.0, 1.17-GCCcore-13.2.0 | Libiconv converts from one character encoding to another through Unicode conversion |
| libjpeg-turbo | 2.1.3-GCCcore-11.3.0, 2.1.5.1-GCCcore-12.3.0 | libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. |
| libogg | 1.3.5-GCCcore-12.3.0 | Ogg is a multimedia container format, and the native file and stream format for the Xiph.orgmultimedia codecs. |
| libopus | 1.4-GCCcore-12.3.0 | Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skypes SILK codec and Xiph.Orgs CELT codec. |
| libpng | 1.6.37-GCCcore-11.3.0, 1.6.38-GCCcore-12.2.0, 1.6.39-GCCcore-12.3.0 | libpng is the official PNG reference library |
| libreadline | 8.1.2-GCCcore-11.3.0, 8.2-GCCcore-12.2.0, 8.2-GCCcore-12.3.0, 8.2-GCCcore-13.2.0 | The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. |
| libsndfile | 1.2.2-GCCcore-12.3.0 | Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface. |
| libsodium | 1.0.18-GCCcore-11.3.0 | Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. |
| libtirpc | 1.3.3-GCCcore-12.3.0 | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. |
| libtool | 2.4.7, 2.4.7-GCCcore-11.3.0, 2.4.7-GCCcore-12.2.0, 2.4.7-GCCcore-12.3.0, 2.4.7-GCCcore-13.2.0 | GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. |
| libunwind | 1.6.2-GCCcore-11.3.0, 1.6.2-GCCcore-12.2.0, 1.6.2-GCCcore-12.3.0 | The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications |
| libvorbis | 1.3.7-GCCcore-12.3.0 | Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressedaudio format |
| libwebp | 1.2.4-GCCcore-11.3.0 | WebP is a modern image format that provides superiorlossless and lossy compression for images on the web. Using WebP,webmasters and web developers can create smaller, richer images thatmake the web faster. |
| libxml2 | 2.10.3-GCCcore-12.2.0, 2.11.4-GCCcore-12.3.0, 2.11.5-GCCcore-13.2.0, 2.9.13-GCCcore-11.3.0 | Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). |
| libxslt | 1.1.38-GCCcore-12.3.0 | Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). |
| libyaml | 0.2.5-GCCcore-11.3.0 | LibYAML is a YAML parser and emitter written in C. |
| lxml | 4.9.2-GCCcore-12.3.0 | The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. |
| lz4 | 1.9.3-GCCcore-11.3.0, 1.9.4-GCCcore-12.2.0, 1.9.4-GCCcore-12.3.0 | LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. |
| mpi4py | 3.1.4-gompi-2023a, 3.1.5-gompi-2023b | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. |
| nettle | 3.9.1-GCCcore-12.3.0 | Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. |
| nlohmann_json | 3.11.2-GCCcore-12.3.0 | JSON for Modern C++ |
| pocl | 1.8-GCC-11.3.0 | Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard |
| poppler | 23.09.0-GCC-12.3.0 | Poppler is a PDF rendering library |
| pybind11 | 2.10.3-GCCcore-12.2.0, 2.11.1-GCCcore-12.3.0, 2.11.1-GCCcore-13.2.0, 2.9.2-GCCcore-11.3.0 | pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. |
| scikit-build | 0.15.0-GCCcore-11.3.0, 0.17.6-GCCcore-12.3.0, 0.17.6-GCCcore-13.2.0 | Scikit-Build, or skbuild, is an improved build system generatorfor CPython C/C++/Fortran/Cython extensions. |
| scikit-build-core | 0.9.3-GCCcore-13.2.0 | Scikit-build-core is a complete ground-up rewrite of scikit-build on top ofmodern packaging APIs. It provides a bridge between CMake and the Python buildsystem, allowing you to make Python modules with CMake. |
| snappy | 1.1.10-GCCcore-12.3.0, 1.1.9-GCCcore-11.3.0 | Snappy is a compression/decompression library. It does not aimfor maximum compression, or compatibility with any other compression library;instead, it aims for very high speeds and reasonable compression. |
| tbb | 2021.11.0-GCCcore-12.3.0, 2021.5.0-GCCcore-11.3.0 | Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. |
| tqdm | 4.64.0-GCCcore-11.3.0 | A fast, extensible progress bar for Python and CLI |
| utf8proc | 2.8.0-GCCcore-12.3.0 | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. |
| zlib | 1.2.12, 1.2.12-GCCcore-11.3.0, 1.2.12-GCCcore-12.2.0, 1.2.13, 1.2.13-GCCcore-12.3.0, 1.2.13-GCCcore-13.2.0 | zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. |
| zstd | 1.5.2-GCCcore-11.3.0, 1.5.2-GCCcore-12.2.0, 1.5.5-GCCcore-12.3.0 | Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. |
math
| Name | Versions | Description |
|---|---|---|
| Eigen | 3.4.0-GCCcore-11.3.0, 3.4.0-GCCcore-12.2.0, 3.4.0-GCCcore-12.3.0, 3.4.0-GCCcore-13.2.0 | Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. |
| GEOS | 3.10.3-GCC-11.3.0, 3.12.0-GCC-12.3.0 | GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) |
| GMP | 6.2.1-GCCcore-11.3.0, 6.2.1-GCCcore-12.2.0, 6.2.1-GCCcore-12.3.0 | GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. |
| Gurobi | 11.0.0-GCCcore-12.3.0, 11.0.2-GCCcore-12.3.0 | The Gurobi Optimizer is a state-of-the-art solver for mathematical programming.The solvers in the Gurobi Optimizer were designed from the ground up to exploit modernarchitectures and multi-core processors, using the most advanced implementations of thelatest algorithms. |
| KaHIP | 3.16-gompi-2023a | The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning. |
| MATLAB | 2023b | MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. |
| METIS | 5.1.0-GCCcore-12.2.0, 5.1.0-GCCcore-12.3.0 | METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. |
| MPFR | 4.1.0-GCCcore-11.3.0, 4.2.0-GCCcore-12.2.0, 4.2.0-GCCcore-12.3.0 | The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. |
| MUMPS | 5.6.1-foss-2023a-metis | A parallel sparse direct solver |
| Mathematica | 14.0.0 | Mathematica is a computational software program used in many scientific, engineering, mathematicaland computing fields. |
| Qhull | 2020.2-GCCcore-11.3.0, 2020.2-GCCcore-12.3.0 | Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. |
| SCOTCH | 7.0.3-gompi-2023a | Software package and libraries for sequential and parallel graph partitioning,static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. |
| ScaFaCoS | 1.0.4-foss-2023a | ScaFaCoS is a library of scalable fast coulomb solvers. |
| Shapely | 1.8.2-foss-2022a | Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects.It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. |
| Voro++ | 0.4.6-GCCcore-12.3.0 | Voro++ is a software library for carrying out three-dimensional computations of the Voronoitessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations,computing the Voronoi cell for each particle individually. It is particularly well-suited for applications thatrely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be usedto analyze a system of particles. |
| libcerf | 2.3-GCCcore-12.3.0 | libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. |
| lpsolve | 5.5.2.11-GCC-12.2.0 | Mixed Integer Linear Programming (MILP) solver |
| magma | 2.6.2-foss-2022a-CUDA-11.7.0 | The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. |
| statsmodels | 0.13.1-foss-2022a | Statsmodels is a Python module that allows users to explore data, estimate statistical models,and perform statistical tests. |
mpi
| Name | Versions | Description |
|---|---|---|
| OpenMPI | 4.1.4-GCC-11.3.0, 4.1.4-GCC-12.2.0, 4.1.5-GCC-12.3.0, 4.1.6-GCC-13.2.0 | The Open MPI Project is an open source MPI-3 implementation. |
| impi | 2021.9.0-intel-compilers-2023.1.0 | Intel MPI Library, compatible with MPICH ABI |
numlib
| Name | Versions | Description |
|---|---|---|
| Armadillo | 12.6.2-foss-2023a | Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. |
| BLIS | 0.9.0-GCC-11.3.0, 0.9.0-GCC-12.2.0, 0.9.0-GCC-12.3.0, 0.9.0-GCC-13.2.0 | BLIS is a portable software framework for instantiating high-performanceBLAS-like dense linear algebra libraries. |
| CGAL | 5.6-GCCcore-12.3.0 | The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. |
| FFTW | 3.3.10-GCC-11.3.0, 3.3.10-GCC-12.2.0, 3.3.10-GCC-12.3.0, 3.3.10-GCC-13.2.0 | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data. |
| FFTW.MPI | 3.3.10-gompi-2022a, 3.3.10-gompi-2022b, 3.3.10-gompi-2023a, 3.3.10-gompi-2023b | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data. |
| GSL | 2.7-GCC-11.3.0, 2.7-GCC-12.2.0, 2.7-GCC-12.3.0 | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. |
| NLopt | 2.7.1-GCCcore-12.3.0 | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. |
| OpenBLAS | 0.3.20-GCC-11.3.0, 0.3.20-GCC-11.3.0-int8, 0.3.21-GCC-12.2.0, 0.3.23-GCC-12.3.0, 0.3.24-GCC-13.2.0 | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. |
| ScaLAPACK | 2.2.0-gompi-2022a-fb, 2.2.0-gompi-2022b-fb, 2.2.0-gompi-2023a-fb, 2.2.0-gompi-2023b-fb | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. |
| SuiteSparse | 5.13.0-foss-2022b-METIS-5.1.0, 7.1.0-foss-2023a | SuiteSparse is a collection of libraries to manipulate sparse matrices. |
| arpack-ng | 3.9.0-foss-2023a | ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. |
| beagle-lib | 4.0.0-GCC-11.3.0 | beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. |
| cuDNN | 8.4.1.50-CUDA-11.7.0 | The NVIDIA CUDA Deep Neural Network library (cuDNN) isa GPU-accelerated library of primitives for deep neural networks. |
| imkl | 2022.1.0, 2023.1.0 | Intel oneAPI Math Kernel Library |
| imkl-FFTW | 2023.1.0-iimpi-2023a | FFTW interfaces using Intel oneAPI Math Kernel Library |
phys
| Name | Versions | Description |
|---|---|---|
| COMSOL | 6.2.0.415 | COMSOL Multiphysics is a general-purpose software platform, based onadvanced numerical methods, for modeling and simulating physics-basedproblems. |
| LHAPDF | 6.5.4-GCC-12.3.0 | Les Houches Parton Density FunctionLHAPDF is the standard tool for evaluating parton distribution functions (PDFs) in high-energy physics. |
| UDUNITS | 2.2.28-GCCcore-12.3.0 | UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. |
| fastjet | 3.4.2-gompi-2023a | A software package for jet finding in pp and e+e- collisions |
| siscone | 3.0.6-GCCcore-12.3.0 | Hadron Seedless Infrared-Safe Cone jet algorithm |
system
| Name | Versions | Description |
|---|---|---|
| CUDA | 11.7.0, 12.1.1 | CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. |
| OpenPGM | 5.2.122-GCCcore-11.3.0 | OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. |
| OpenSSL | 1.1 | The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. |
| file | 5.43-GCCcore-12.3.0 | The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains. |
| hwloc | 2.7.1-GCCcore-11.3.0, 2.8.0-GCCcore-12.2.0, 2.9.1-GCCcore-12.3.0, 2.9.2-GCCcore-13.2.0 | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. |
| libdeflate | 1.10-GCCcore-11.3.0, 1.18-GCCcore-12.3.0 | Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. |
| libpciaccess | 0.16-GCCcore-11.3.0, 0.17-GCCcore-12.2.0, 0.17-GCCcore-12.3.0, 0.17-GCCcore-13.2.0 | Generic PCI access library. |
toolchain
| Name | Versions | Description |
|---|---|---|
| foss | 2022a, 2022b, 2023a, 2023b | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. |
| gfbf | 2022b, 2023a, 2023b | GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. |
| gompi | 2022a, 2022b, 2023a, 2023b | GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. |
| iimpi | 2023a | Intel C/C++ and Fortran compilers, alongside Intel MPI. |
| intel | 2023a | Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). |
tools
| Name | Versions | Description |
|---|---|---|
| Argbash | 2.10.0-GCCcore-13.2.0 | Argbash is a code generator - write a short definition and let Argbash modify your script so it magically starts to expose a command-line interface to your users and arguments passed using this interface as variables. |
| CppUnit | 1.15.1-GCCcore-11.3.0 | CppUnit is the C++ port of the famous JUnit framework for unit testing. |
| DB | 18.1.40-GCCcore-11.3.0, 18.1.40-GCCcore-12.2.0 | Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. |
| EasyBuild | 4.9.1 | EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way. |
| GLPK | 5.0-GCCcore-12.3.0 | The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. |
| Ghostscript | 10.01.2-GCCcore-12.3.0 | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. |
| HPL | 2.3-intel-2023a | HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. |
| Meson | 0.62.1-GCCcore-11.3.0, 0.64.0-GCCcore-12.2.0, 1.1.1-GCCcore-12.3.0, 1.2.3-GCCcore-13.2.0 | Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. |
| Ninja | 1.10.2-GCCcore-11.3.0, 1.11.1-GCCcore-12.2.0, 1.11.1-GCCcore-12.3.0, 1.11.1-GCCcore-13.2.0 | Ninja is a small build system with a focus on speed. |
| Szip | 2.1.1-GCCcore-11.3.0, 2.1.1-GCCcore-12.2.0, 2.1.1-GCCcore-12.3.0 | Szip compression software, providing lossless compression of scientific data |
| UnZip | 6.0-GCCcore-11.3.0, 6.0-GCCcore-12.2.0, 6.0-GCCcore-12.3.0, 6.0-GCCcore-13.2.0 | UnZip is an extraction utility for archives compressedin .zip format (also called "zipfiles"). Although highly compatible bothwith PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP'sown Zip program, our primary objectives have been portability andnon-MSDOS functionality. |
| XZ | 5.2.5-GCCcore-11.3.0, 5.2.7-GCCcore-12.2.0, 5.4.2-GCCcore-12.3.0, 5.4.4-GCCcore-13.2.0 | xz: XZ utilities |
| Z3 | 4.10.2-GCCcore-11.3.0, 4.12.2-GCCcore-12.3.0 | Z3 is a theorem prover from Microsoft Research with support for bitvectors,booleans, arrays, floating point numbers, strings, and other data types. Thismodule includes z3-solver, the Python interface of Z3. |
| Zip | 3.0-GCCcore-11.3.0, 3.0-GCCcore-12.3.0 | Zip is a compression and file packaging/archive utility.Although highly compatible both with PKWARE's PKZIP and PKUNZIPutilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectiveshave been portability and other-than-MSDOS functionality |
| archspec | 0.2.1-GCCcore-12.3.0 | A library for detecting, labeling, and reasoning about microarchitectures |
| aria2 | 1.36.0-GCCcore-11.3.0 | aria2 is a lightweight multi-protocol & multi-source command-line download utility. |
| arrow-R | 14.0.1-foss-2023a-R-4.3.2 | R interface to the Apache Arrow C++ library |
| binutils | 2.38, 2.38-GCCcore-11.3.0, 2.39, 2.39-GCCcore-12.2.0, 2.40, 2.40-GCCcore-12.3.0, 2.40-GCCcore-13.2.0 | binutils: GNU binary utilities |
| bokeh | 2.4.3-foss-2022a | Statistical and novel interactive HTML plots for Python |
| bzip2 | 1.0.8-GCCcore-11.3.0, 1.0.8-GCCcore-12.2.0, 1.0.8-GCCcore-12.3.0, 1.0.8-GCCcore-13.2.0 | bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. |
| cURL | 7.83.0-GCCcore-11.3.0, 7.86.0-GCCcore-12.2.0, 8.0.1-GCCcore-12.3.0, 8.3.0-GCCcore-13.2.0 | libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. |
| cffi | 1.15.1-GCCcore-12.3.0, 1.15.1-GCCcore-13.2.0 | C Foreign Function Interface for Python. Interact with almost any C code fromPython, based on C-like declarations that you can often copy-paste from headerfiles or documentation. |
| cpio | 2.15-GCCcore-12.3.0 | The cpio package contains tools for archiving. |
| cppy | 1.2.1-GCCcore-11.3.0 | A small C++ header library which makes it easier to writePython extension modules. The primary feature is a PyObject smart pointerwhich automatically handles reference counting and provides conveniencemethods for performing common object operations. |
| cryptography | 41.0.1-GCCcore-12.3.0, 41.0.5-GCCcore-13.2.0 | cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. |
| expat | 2.4.8-GCCcore-11.3.0, 2.4.9-GCCcore-12.2.0, 2.5.0-GCCcore-12.3.0, 2.5.0-GCCcore-13.2.0 | Expat is an XML parser library written in C. It is a stream-oriented parserin which an application registers handlers for things the parser might findin the XML document (like start tags). |
| expecttest | 0.1.3-GCCcore-11.3.0 | This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. |
| flit | 3.9.0-GCCcore-12.3.0, 3.9.0-GCCcore-13.2.0 | A simple packaging tool for simple packages. |
| gettext | 0.21, 0.21-GCCcore-11.3.0, 0.21.1, 0.21.1-GCCcore-12.2.0, 0.21.1-GCCcore-12.3.0, 0.22, 0.22-GCCcore-13.2.0 | GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we maybuild many other steps. This package offers to programmers, translators, and even users, a well integrated set of toolsand documentation |
| git | 2.36.0-GCCcore-11.3.0-nodocs, 2.38.1-GCCcore-12.2.0-nodocs, 2.41.0-GCCcore-12.3.0-nodocs, 2.42.0-GCCcore-13.2.0 | Git is a free and open source distributed version control system designedto handle everything from small to very large projects with speed and efficiency. |
| git-lfs | 3.5.1 | Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com |
| googletest | 1.13.0-GCCcore-12.3.0 | Google's framework for writing C++ tests on a variety of platforms |
| groff | 1.22.4-GCCcore-11.3.0, 1.22.4-GCCcore-12.2.0, 1.22.4-GCCcore-12.3.0 | Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. |
| gzip | 1.12-GCCcore-11.3.0, 1.12-GCCcore-12.2.0, 1.12-GCCcore-12.3.0 | gzip (GNU zip) is a popular data compression program as a replacement for compress |
| hatchling | 1.18.0-GCCcore-12.3.0, 1.18.0-GCCcore-13.2.0 | Extensible, standards compliant build backend used by Hatch,a modern, extensible Python project manager. |
| help2man | 1.49.2-GCCcore-11.3.0, 1.49.2-GCCcore-12.2.0, 1.49.3-GCCcore-12.3.0, 1.49.3-GCCcore-13.2.0 | help2man produces simple manual pages from the '--help' and '--version' output of other commands. |
| hypothesis | 6.46.7-GCCcore-11.3.0, 6.68.2-GCCcore-12.2.0, 6.82.0-GCCcore-12.3.0, 6.90.0-GCCcore-13.2.0 | Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. |
| jax | 0.3.25-foss-2022a | Composable transformations of Python+NumPy programs:differentiate, vectorize, JIT to GPU/TPU, and more |
| jq | 1.6-GCCcore-12.3.0 | jq is a lightweight and flexible command-line JSON processor. |
| libarchive | 3.6.1-GCCcore-11.3.0, 3.6.1-GCCcore-12.2.0, 3.6.2-GCCcore-12.3.0, 3.7.2-GCCcore-13.2.0 | Multi-format archive and compression library |
| lowdown | 1.1.0-GCC-13.2.0 | lowdown is a Markdown translator producing HTML5, roff documents in the ms and man formats, LaTeX, gemini, OpenDocument, and terminal output. The open source C source code has no dependencies.The tools are documented in lowdown(1) and lowdown-diff(1), the language in lowdown(5), and the library interface in lowdown(3). |
| maeparser | 1.3.1-gompi-2023a | maeparser is a parser for Schrodinger Maestro files. |
| meson-python | 0.15.0-GCCcore-13.2.0 | Python build backend (PEP 517) for Meson projects |
| networkx | 2.8.4-foss-2022a, 3.1-gfbf-2023a, 3.2.1-gfbf-2023b | NetworkX is a Python package for the creation, manipulation,and study of the structure, dynamics, and functions of complex networks. |
| numactl | 2.0.14-GCCcore-11.3.0, 2.0.16-GCCcore-12.2.0, 2.0.16-GCCcore-12.3.0, 2.0.16-GCCcore-13.2.0 | The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. |
| patchelf | 0.18.0-GCCcore-12.3.0, 0.18.0-GCCcore-13.2.0 | PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. |
| poetry | 1.5.1-GCCcore-12.3.0, 1.6.1-GCCcore-13.2.0 | Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. |
| py-cpuinfo | 9.0.0-GCCcore-11.3.0 | py-cpuinfo gets CPU info with pure Python. |
| pytest-xdist | 2.5.0-GCCcore-11.3.0 | xdist: pytest distributed testing pluginThe pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them.Before running tests remotely, pytest efficiently rsyncs yourprogram source code to the remote place. All test results are reportedback and displayed to your local terminal. You may specify differentPython versions and interpreters. |
| rclone | 1.66.0 | Rclone is a command line program to sync files and directories to and from a variety of online storage services |
| re2c | 3.1-GCCcore-12.3.0 | re2c is a free and open-source lexer generator for C and C++. Its main goal is generatingfast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of usingtraditional table-driven approach, re2c encodes the generated finite state automata directly in the formof conditional jumps and comparisons. |
| setuptools-rust | 1.6.0-GCCcore-12.3.0, 1.8.0-GCCcore-13.2.0 | setuptools-rust is a plugin for setuptools to build Rust Python extensionsimplemented with PyO3 or rust-cpython. |
| tmux | 3.3a, 3.3a-GCCcore-12.3.0 | tmux is a terminal multiplexer: it enables a number ofterminals to be created, accessed, and controlled from a single screen. tmuxmay be detached from a screen and continue running in the background, thenlater reattached. |
| util-linux | 2.38-GCCcore-11.3.0, 2.38.1-GCCcore-12.2.0, 2.39-GCCcore-12.3.0 | Set of Linux utilities |
| virtualenv | 20.23.1-GCCcore-12.3.0, 20.24.6-GCCcore-13.2.0 | A tool for creating isolated virtual python environments. |
| xxd | 9.0.2112-GCCcore-12.3.0 | xxd is part of the VIM package and this will only install xxd, not vim!xxd converts to/from hexdumps of binary files. |
vis
| Name | Versions | Description |
|---|---|---|
| ATK | 2.38.0-GCCcore-11.3.0, 2.38.0-GCCcore-12.3.0 | ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. |
| Avogadro2 | 1.97.0-linux-x86_64 | Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. |
| FFmpeg | 4.4.2-GCCcore-11.3.0, 6.0-GCCcore-12.3.0 | A complete, cross-platform solution to record, convert and stream audio and video. |
| Fiji | 2.9.0-Java-8 | Fiji is an image processing packagea 'batteries-included' distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.This release is based on ImageJ-2.1.0 and Fiji-2.1.1 |
| GL2PS | 1.4.2-GCCcore-12.2.0 | GL2PS: an OpenGL to PostScript printing library |
| GLib | 2.72.1-GCCcore-11.3.0, 2.77.1-GCCcore-12.3.0 | GLib is one of the base libraries of the GTK+ project |
| GST-plugins-bad | 1.20.2-GCC-11.3.0 | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. |
| GST-plugins-base | 1.20.2-GCC-11.3.0 | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. |
| GStreamer | 1.20.2-GCC-11.3.0 | GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. |
| GTK3 | 3.24.37-GCCcore-12.3.0 | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. |
| GTK4 | 4.7.0-GCC-11.3.0 | GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. |
| Gdk-Pixbuf | 2.42.10-GCCcore-12.3.0, 2.42.8-GCCcore-11.3.0 | The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. |
| HarfBuzz | 4.2.1-GCCcore-11.3.0, 5.3.1-GCCcore-12.3.0 | HarfBuzz is an OpenType text shaping engine. |
| ImageMagick | 7.1.1-15-GCCcore-12.3.0 | ImageMagick is a software suite to create, edit, compose, or convert bitmap images |
| JasPer | 2.0.33-GCCcore-11.3.0, 4.0.0-GCCcore-12.3.0 | The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. |
| LittleCMS | 2.15-GCCcore-12.3.0 | Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. |
| Mesa | 22.0.3-GCCcore-11.3.0, 22.2.4-GCCcore-12.2.0, 23.1.4-GCCcore-12.3.0 | Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. |
| OpenCV | 4.6.0-foss-2022a-CUDA-11.7.0-contrib | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. |
| OpenEXR | 3.1.5-GCCcore-11.3.0, 3.1.7-GCCcore-12.3.0 | OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications |
| POV-Ray | 3.7.0.10-GCC-12.3.0 | The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports. |
| Pango | 1.50.14-GCCcore-12.3.0, 1.50.7-GCCcore-11.3.0 | Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. |
| ParaView | 5.11.2-foss-2023a | ParaView is a scientific parallel visualizer. |
| Pillow | 9.1.1-GCCcore-11.3.0 | Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. |
| PyCairo | 1.21.0-GCCcore-11.3.0 | Python bindings for the cairo library |
| PyGObject | 3.42.1-GCCcore-11.3.0 | PyGObject is a Python package which provides bindings for GObject basedlibraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. |
| Tk | 8.6.12-GCCcore-11.3.0, 8.6.13-GCCcore-12.3.0 | Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. |
| VTK | 9.3.0-foss-2023a | The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. |
| Wayland | 1.20.0-GCCcore-11.3.0, 1.22.0-GCCcore-12.3.0 | Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. |
| X11 | 20220504-GCCcore-11.3.0, 20221110-GCCcore-12.2.0, 20230603-GCCcore-12.3.0 | The X Window System (X11) is a windowing system for bitmap displays |
| Xvfb | 21.1.8-GCCcore-12.3.0 | Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. |
| at-spi2-atk | 2.38.0-GCCcore-11.3.0, 2.38.0-GCCcore-12.3.0 | AT-SPI 2 toolkit bridge |
| at-spi2-core | 2.44.1-GCCcore-11.3.0, 2.49.91-GCCcore-12.3.0 | Assistive Technology Service Provider Interface. |
| cairo | 1.17.4-GCCcore-11.3.0, 1.17.8-GCCcore-12.3.0 | Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB |
| fontconfig | 2.14.0-GCCcore-11.3.0, 2.14.1-GCCcore-12.2.0, 2.14.2-GCCcore-12.3.0 | Fontconfig is a library designed to provide system-wide font configuration, customization and application access. |
| freetype | 2.12.1-GCCcore-11.3.0, 2.12.1-GCCcore-12.2.0, 2.13.0-GCCcore-12.3.0 | FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. |
| gnuplot | 5.4.8-GCCcore-12.3.0 | Portable interactive, function plotting utility |
| imageio | 2.22.2-foss-2022a | Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. |
| jbigkit | 2.1-GCCcore-11.3.0, 2.1-GCCcore-12.3.0 | JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. |
| libGLU | 9.0.2-GCCcore-12.2.0, 9.0.3-GCCcore-12.3.0 | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. |
| matplotlib | 3.5.2-foss-2022a | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. |
| pixman | 0.40.0-GCCcore-11.3.0, 0.42.2-GCCcore-12.3.0 | Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. |
| scikit-image | 0.19.3-foss-2022a | scikit-image is a collection of algorithms for image processing. |
| x264 | 20220620-GCCcore-11.3.0, 20230226-GCCcore-12.3.0 | x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. |
| x265 | 3.5-GCCcore-11.3.0, 3.5-GCCcore-12.3.0 | x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. |